Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1179 ATGGGTGGAGTTGGAGTAGAAGTAGATCATCACCATCATCATGTTGCAGAGGAGAATTGCTCTTCCAAACTCAGCAACCAAGGGGAGGGTCTCCGTCAATACTATTCTCTCCACATCCATGATTTTCAGCTTCTCCTTCAACATAAGACTCATAACCTCAATCGTCTTCAGGCTCAGCGTAATGACCTCAATTCCAAAGTCAGGATGCTTCGTGAAGAACTTCACCTTCTTCAGGAGCCTGGATCTTATGTCGGTGAAGTTGTCAAAGTCATGGGAAAAAACAAAGTCTTAGTCAAGGTTCATCCAGAAGGGAAATATGTTGTTGATATTGATAAAAACATTGATATTACAAAGATTATTCCATCAACAAGAGTTGCACTCCGCAATGACAGCTATGTTCTTCATTTGATTCTCCCAAGCAAAGTTGATCCACTCGTCAATCTCATGAAAGTTGAGAAGGTTCCTGACTCTACCTATGACATCATTGGTGGCTTGGACCAGCAAATCAAAGAAATCAAAGAGGTCATTGAGCTGCCAATTAAACACCCTGAACTCTTTGAAAGTCTTGGTATAGCTCAGCCAAAGGTAGTATCTCGCTCCGAGGTTGAAGGTGTCTTGCTTTATGGGCCACCTGGTACAGGAAAAACCCTGTTGGCCAGGGCAGTGGCACATCACACTGACTGTACTTTTATCAGGGTATCTGGTTCTGAATTAGTTCAGAAATATATTGGAGAAGGTTCCAGAATGGTCAGGGAACTTTTCGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTGCAGCGCACTATGCTGGAGCTTCTCAACCAGTTAGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCCACAAATCGGATTGATATCCTTGATCAAGCCCTCCTTCGACCTGGACGTATTGACCGGAAGATTGAATTCCCAAACCCTAACGCAGAGTCTCGGCAGGATATTTTGAAAATCCATTCTAGAAGAATGAATTTAATGCGTGGTATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGAGCTGAGCTTAAAGCGGTGTGCACAGAAGCTGGAATGTTTGCTTTGAGGGAGAGAAGGGTGCATGTGACTCAGGAAGATTTTGAGATGGCTGTGGCGAAGGTGATGAAAAAGGAAACTGAGAAAAACATGTCATTGCGGAAGTTGTGGAAGTAA 1281 0.4325 MGGVGVEVDHHHHHVAEENCSSKLSNQGEGLRQYYSLHIHDFQLLLQHKTHNLNRLQAQRNDLNSKVRMLREELHLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKIIPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDIIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKVVSRSEVEGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNAESRQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1179 426 Pfam AAA+ lid domain 362 404 IPR041569 -
Lal1g1179 426 SMART AAA_5 201 341 IPR003593 -
Lal1g1179 426 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 51 411 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lal1g1179 426 Gene3D - 10 149 IPR012340 -
Lal1g1179 426 Pfam Proteasomal ATPase OB C-terminal domain 84 139 IPR032501 -
Lal1g1179 426 Pfam ATPase family associated with various cellular activities (AAA) 205 338 IPR003959 GO:0005524|GO:0016887
Lal1g1179 426 ProSitePatterns AAA-protein family signature. 309 327 IPR003960 GO:0005524|GO:0016887
Lal1g1179 426 Gene3D - 344 421 - -
Lal1g1179 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 415 IPR027417 -
Lal1g1179 426 Coils Coil 46 73 - -
Lal1g1179 426 CDD AAA 163 338 - -
Lal1g1179 426 PANTHER BNAA02G04630D PROTEIN 25 423 IPR035261 GO:0036402
Lal1g1179 426 Gene3D - 150 339 IPR027417 -
Lal1g1179 426 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 25 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1179 Lal-Chr1 13037703 13041253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1179 158 413 Miscellaneous Gene Families AT5G58870 40.076 1.45e-53 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1179 K03066 - gmx:100812783 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1279 20 17257865 17261292 Lal1g1179 1 13037703 13041253 LSH
Lal1g1179 1 13037703 13041253 Lal18g0309 18 2551262 2555699 LSH