Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1027 ATGGAATTCTCTGTAAGAGCAGCGGAACTAACAACTCTATTAGAAAGTAGAATTACCAACTTTTACACTAATTTGAAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGTACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCGCTATAAAAGAAGGAGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGTCCCTGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAAAGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGTCGTGCTATTGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTTGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCTGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGTCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACTAGGCTGTGAGGTTTTCCCAGGCGATGTTTTCTATTTACATTCTCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTACTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCAGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAAGAAATTCTAGTCATTTATGCAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAAAATTGCTCAATATGAGAGAGCCATTCTAACTACTATCAAACCTGAATTACTACAATCACTAAAAGGTGGACTAACTAGCGAAAGAAAGATAGAACCAGATGCATTCTTAAAAGAAAAAGCGCTAACTGTAATATGA 1479 0.4361 MEFSVRAAELTTLLESRITNFYTNLKVDEIGRVVSVGDGIVRVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKSLLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIESKSVHEPMQTGLKAVDSLVPIGRAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFCDNGMHALIIYDDLSKQVVAYRQMSLLLRRPLGCEVFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPTINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKEILVIYAAVNGFCDRMPLDKIAQYERAILTTIKPELLQSLKGGLTSERKIEPDAFLKEKALTVI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1027 492 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 96 IPR036121 GO:0046034|GO:1902600
Lal1g1027 492 PIRSF F_ATPase_subunit_alpha 3 489 IPR005294 GO:0015986|GO:0045261|GO:0046933
Lal1g1027 492 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 360 IPR000194 GO:0005524
Lal1g1027 492 Pfam ATP synthase alpha/beta family, beta-barrel domain 27 94 IPR004100 GO:0046034|GO:1902600
Lal1g1027 492 Pfam ATP synthase alpha/beta chain, C terminal domain 367 466 IPR000793 GO:0015986
Lal1g1027 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 366 IPR027417 -
Lal1g1027 492 CDD F1_ATPase_alpha 96 363 IPR033732 GO:0032559
Lal1g1027 492 Gene3D - 368 488 IPR038376 -
Lal1g1027 492 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 6 487 - -
Lal1g1027 492 CDD ATP-synt_F1_alpha_N 29 94 - -
Lal1g1027 492 TIGRFAM atpA: ATP synthase F1, alpha subunit 5 468 IPR005294 GO:0015986|GO:0045261|GO:0046933
Lal1g1027 492 Hamap ATP synthase subunit alpha [atpA]. 3 492 IPR005294 GO:0015986|GO:0045261|GO:0046933
Lal1g1027 492 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 369 467 - -
Lal1g1027 492 CDD ATP-synt_F1_alpha_C 371 486 IPR000793 GO:0015986
Lal1g1027 492 Gene3D - 4 95 IPR023366 -
Lal1g1027 492 Gene3D - 96 367 IPR027417 -
Lal1g1027 492 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 6 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1027 Lal-Chr1 7990238 7991759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1027 62 366 Primary Pumps ATPases(2) AT4G38510 24.620 1.26e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1027 K02132 - gmx:15308608 889.026