Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1007 ATGGCTTCAATTTCTACGAAATTGTTCTTCAGCAACGCGTGCTCCTTCTTCTTCTTCTTGCTTCTCGTTCCTGAACTCAGGAATGTTGAAGCACACAAGTTACAGAGCTTGAACAACTCATCAATGGCGGCGAGGGCAAAAGAGGCTGATGAATTAAATGAGCGTGCTGCTGTGGCTGACCCAGAGGAAGTGGTTTCAATGGTTTCCACGAGGATTCAGAATAGCACAGAAAGAAGGAACCTAGGATTTTTCTCTTGTGGAACTGGTAACCCGATCGATGATTGCTGGCGTTGTGACCAAAACTGGCACCGCGACAGGAAGCGCCTAGCGGATTGTGGCATTGGTTTTGGTAGAAATGCCATTGGTGGTCGCGATGGGAGGTTCTACATTGTCACTAACCCCAGAGATGATGACCCGGTTAACCCGAGGCCGGGCACTTTGCGCTACGCTGTTATCCAAGATAAGCCTCTATGGATTGTGTTCCAAAGGGACATGGTTATACAATTGAAGCAAGAACTTATTATGAACAGCTTCAAGACTATTGATGCAAGAGGTGCAAATGTGCACATTGCTAATGGAGCATGCATCACAATTCAGTATGTTACAAATATTATCATTCATGGCTTGCATATCCATGATTGCAAACCCACTGGAAATGCCATGGTGAGGAGTTCCCCCTCCCATTTTGGGTGGAGAACAATGGCTGATGGAGATGCCATCTCCATTTTTGGCTCAAGTCACATTTGGGTTGATCACAATTCTTTGTCCAATTGTGCTGATGGCCTTGTGGATGCTATCATGGGTTCAACAGCTATAACAATTTCCAATAACCACCTCACCCACCACAATGAGGTGATTCTGTTGGGCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTAACCATAGCATACAACCATTTTGGAGAAGGACTTATCCAGAGAATGCCTAGATGTAGACATGGGTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAATAGATACAATGCTCCAGTTAACCCCTTTGCAAAGGAGGTGACTAAGAGAGTGGAAACAGCTGCAAGCCAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCAGAATGGTGCTTATTTCATACCATCTGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCTAGCTTAGGAGCTAAATCTTCTTCTATGGTTGGTTCCATCACTTCAAATGCTGGTGCATTAGGCTGCCGCAGAGGACATCAGTGCTAA 1317 0.4601 MASISTKLFFSNACSFFFFLLLVPELRNVEAHKLQSLNNSSMAARAKEADELNERAAVADPEEVVSMVSTRIQNSTERRNLGFFSCGTGNPIDDCWRCDQNWHRDRKRLADCGIGFGRNAIGGRDGRFYIVTNPRDDDPVNPRPGTLRYAVIQDKPLWIVFQRDMVIQLKQELIMNSFKTIDARGANVHIANGACITIQYVTNIIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAIMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAASQWKGWNWRSEGDLLQNGAYFIPSGAGASASYARASSLGAKSSSMVGSITSNAGALGCRRGHQC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1007 438 SUPERFAMILY Pectin lyase-like 65 432 IPR011050 -
Lal1g1007 438 PANTHER PECTATE LYASE 18-RELATED 46 435 IPR045032 GO:0030570
Lal1g1007 438 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Lal1g1007 438 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Lal1g1007 438 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Lal1g1007 438 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Lal1g1007 438 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Lal1g1007 438 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Lal1g1007 438 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Lal1g1007 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Lal1g1007 438 SMART amb_all 164 361 IPR002022 -
Lal1g1007 438 PANTHER PECTATE LYASE 46 435 - -
Lal1g1007 438 Gene3D - 89 431 IPR012334 -
Lal1g1007 438 Pfam Pectate lyase 175 353 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1007 Lal-Chr1 7884841 7890257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1007 27 438 Polysaccharide Lyase AT4G13710 79.616 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1007 K01728 - gmx:100808253 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1103 2 7833521 7839024 Lal1g1007 1 7884841 7890257 LSH
Lal9g1037 9 8285558 8290421 Lal1g1007 1 7884841 7890257 LSH