Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0972 ATGATACTTTCAGATTCAGAATTCACTATTAATGATTACTTTCTACCCCAACAAGAAGTTCCTGTTAGAAAAAGCCTTCAAATGCCTCAAATTTCGTACTCTAAACTTCCAAGATCATCATCAAATCTTAGCACCCGAAAGCCCTCTATAAGTATCACAATCCCTTCCATGACCTCAACTATCTCATCACAACACAAGGAAACACAAATATATAATCACATTTCTTCTTATTCTTCAGATAACAGTGATGTTACCAAAGAGGAGAAACACTATAGAGGTGTTAGAAGAAGACCATGGGGGAAGTTTGCAGCAGAAATTCGTGACCCAAATAGAAAAGGAACAAGGGTATGGCTTGGAACCTTTGACACAGCAATTGAGGCTGCAAAAGCTTATGATAGAGCTGCTTTCAAGATGAGAGGAAACAAAGCAATACTCAACTTTCCTCTAGAGGTTGGGAATATAATTTCTCAACAAGAAGTGGTTTTGGTTGGTAATAAGAGGAGAAGAGATGAGGAGAGTGAAGTAGTGAATGAGAATAAGAAGTTGAAGAGAGAAGAAGAAGGGTGTTTATCTCTTAAAGAGAAAGGAGTTATAGTTTGTCCTCCTTTGACTCCATCATGTTGGAAAGGGTTTTGGGACACTCATGATGTTATGGGAACTATCTTTAGTGTACCTCCTTTGTCACCCTTATCTCCACTCATGGTTCTTTGA 711 0.3826 MILSDSEFTINDYFLPQQEVPVRKSLQMPQISYSKLPRSSSNLSTRKPSISITIPSMTSTISSQHKETQIYNHISSYSSDNSDVTKEEKHYRGVRRRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKMRGNKAILNFPLEVGNIISQQEVVLVGNKRRRDEESEVVNENKKLKREEEGCLSLKEKGVIVCPPLTPSCWKGFWDTHDVMGTIFSVPPLSPLSPLMVL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0972 236 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Lal1g0972 236 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Lal1g0972 236 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Lal1g0972 236 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Lal1g0972 236 Coils Coil 168 188 - -
Lal1g0972 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 30 223 - -
Lal1g0972 236 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Lal1g0972 236 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 223 - -
Lal1g0972 236 SUPERFAMILY DNA-binding domain 90 150 IPR016177 GO:0003677
Lal1g0972 236 CDD AP2 89 148 IPR001471 GO:0003700|GO:0006355
Lal1g0972 236 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0972 Lal-Chr1 7404322 7405032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0972 39 233 AP2-EREBP Transcription Factor Family AT5G51190 46.569 4.51e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal1g0972 AP2 1.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0972 K09286 - gmx:100816416 229.565