Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0955 ATGGGTATGTTTGATCTCAATGTTAACATTATCCATATTGATGATACTCATGACTCAGCCTATCCTAAAGAGTTGGTGCAACTTCAAAGTTTTCCATCCAAAATATCACATTCTAGGGCATCTAAATCCTCAGTTGTGATTAATCATGCAGAAGAAGATTCTTCAAACAATTATTCACCCTTCATTTTTGACATAATGAAGAAAGGAAAAGATGCCAGTGAGAGGAACAAGGAAGATGAAAACATAGGACATGAGCAAGAGTTAACTATGACCCTTTTCCCTGTGACTGCAGATAGAGGAGGAAGAGTTTCTGATATGAAAAAGAGGAAAAATGAATGGTTGAACTTGTCCTTTTCTGAGCATGATGGACAAAATGAACTAAGAACCTTGCATCAGAAGCAATATCAAATCAAGAAAGGAAGGAGAGGACCAAGGTCTCAAAGCTCACAGTTCCGGGGTGTTACCTTCTACCGCAGAACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTTTATTTGGGTGGATTTGACACTGCTCAAGCTGCAGCAAGAGCATATGATAAGGCTGCAATTAAATTTCGTGGAGTTGATGCTGATATAAATTTTGATTTGAGTGATTATGAGGAGGATATGAAACAGATGAGAAGTTTGAGTAAGGAAGAGTTTGTTCTCCAACTTCGTCGCCAAATAAATGGAATATCAAGAGCAACTTCAACATATAGGCGTCTATTAGCTCTTCACAAATATGGTCAAGGGAATGCACAAATGACCTCATTTGTTAGCACAAGATTTTGTCAAAAGCCACCCATCAAACGTGATGATGGACAAGTCTTGACCAGCCTCAAGCCATGCAATTATTATAATAGAGAGATAATTGCAAATTCCAGTAAAGGAGGCACTAGTTATAATCTTGATTTGAGCCTAGGAATTTCTCCATCTTATTGTAAGCAATTGAGGATTAATGATTCTGAGAGAGGCTTATGCTTTGGATATACAGATCCTAAGATGCCCCACCAATGGGAAACTAAGGAGAAGAAGGGGACTGAAAATGTTCCTTTGCAAAGATTCTCAAACTTGGCTAAGCAAATTTGCAGCAATGTCAGCATTGGCTCAGGGAGATTGTTATCTAGTGCTGTATCTTCAGGACACTTTCATAATAATAGCAATGTTTCATCAGCCCCAACATCAAATTATCACATATAA 1212 0.3845 MGMFDLNVNIIHIDDTHDSAYPKELVQLQSFPSKISHSRASKSSVVINHAEEDSSNNYSPFIFDIMKKGKDASERNKEDENIGHEQELTMTLFPVTADRGGRVSDMKKRKNEWLNLSFSEHDGQNELRTLHQKQYQIKKGRRGPRSQSSQFRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDKAAIKFRGVDADINFDLSDYEEDMKQMRSLSKEEFVLQLRRQINGISRATSTYRRLLALHKYGQGNAQMTSFVSTRFCQKPPIKRDDGQVLTSLKPCNYYNREIIANSSKGGTSYNLDLSLGISPSYCKQLRINDSERGLCFGYTDPKMPHQWETKEKKGTENVPLQRFSNLAKQICSNVSIGSGRLLSSAVSSGHFHNNSNVSSAPTSNYHI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0955 403 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 394 - -
Lal1g0955 403 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Lal1g0955 403 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Lal1g0955 403 CDD AP2 149 208 IPR001471 GO:0003700|GO:0006355
Lal1g0955 403 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Lal1g0955 403 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 394 - -
Lal1g0955 403 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Lal1g0955 403 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0955 Lal-Chr1 7122066 7126508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0955 3 266 AP2-EREBP Transcription Factor Family AT2G28550 49.451 1.20e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal1g0955 AP2 7.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0955 K09284 - gmx:100776138 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0955 1 7122066 7126508 Lal2g1083 2 7605533 7609134 ECH
Lal1g0955 1 7122066 7126508 Lal1g0955 1 7122066 7126508 ECH