Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0925 ATGACATCAGGTTCGGATTTCACTGTTGAATTGGTGATGCAGGATTTTGATCCATCAGTTTCTCGCAATTTGAGGCTTGATGTTTACATTTATGATTATTTGGTGAAGAAAAAATTGCATAATACTGCCAAGACATTCATGACAGAAGGAAACGTTTCTTCTGATCCAGTAGCTATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATAGCGAGGACAAATGACAAACATTCTGAGCCTGCTGCAGCATATTTAGAGTTGCAAGCTCAACAGATTAAGGCAAAAGAACAGCAACTGCAAATGCAACAGTTATTAATGCGACAAGCTCAGATGCAAAGAAGGGATTCTAATCATCCTCCTGTTGGTGGTCCTGTAAACGCTGTCACTACAGAAGGAGTTCTTGGGCAATCTACTGCCACTGCTTTAGCTGCAAAAATGTATGAAGATAGGATGAAGCACTCTAATGCCATGGAAACAGATACATGCCAACCACTTGTAGATGCTAGAATGGCTCTTTTGAAATCAACAAATCATCCCGGGCAGATGGTTCAAGGAAATTCAGGGAGTGTGACAGCAGCTTTGCAGCAGATGCAGGCTCGAACTCAACAAATCCCTGAGATCAAAAGTGAAGTCAACATGGGCACCATGCAGAGATCCTTGCCTATGGACCGTTCTTCAATTTATGAGCAGGGAGCAATGCAGTCAAAGTCTGGAATCTCAAATGCAGGATTAAATCCTGGAGTTGGTGGCCTCACATTGAAAGGATGGCCTTTAACAGGCATAGATCAAATTCGTCCTGGTTTTGGAGCACAAGTTCAAAAGCCTCTCCTTCAGAGTCCTAACCAATTTCAACTTTTGCCACAACACCAACAGCAGCAGCTCCTCGCACAGGTTCAGGCGCAAGGAAATATTGGCAATTCACCTATGTTTGGAGATATGGACCCACAGCGGTTAAGGGGACTAGCTAGGGGAAGTTTGAATGTGAAAGATGGTCAACCAATTGCCAATGATGGTTCCATAGGTTCTCCAATGCAATCTAATTCATCTAAGATTAACATGCCACATATCCAACAATCCACCTCCCAGCAGCAACAAGATCCTTTGCATCCACAGCAACCTGCACAGAATAACCGAAAAAGGAAAGGCCCTACATCTTCGGGAGCTGCCAACAGTACTGGTACAGGAAATACACTCGGTCCTTCTAATTCTCAACCGTCAACTCCATCTACTCACACTCCTGGCGATGGAGTAGCTATGCCGGGTAACTTGCAGAATGCTGCTGGTGTTTCCAAAGGTTTAATAATGTATGGTACTGATGGAGCAGGTGGTCTTGCATCCTCCACAAACCAGCTGTTGCAGGATGACATGGAACACTTTGGAGATGTTGGCTCATTAGATGATAATGTTGAATCATTTCTCTCACAGGACGAAGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGGAACCAGTCTGAGCACACTACAGATGCTTCAAAAGGTTTTTCATTCAGTGAAGTTGGTTCTATACGCAAGAGCAACAACAAGGTCGTTTGTTGTCATTTCTCCTCAGATGGGAAATTGTTAGCTAGTGCAGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAGACAGAGAGCACTCAGGAGGAGCACAATCTTATTATTACTGATGTTCGCTTTAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACCGTGCGTCTTTGGGATGCTGCAGATAGCAATGATTACAAATCCGGGAAATATGGTAGTGGAGAAACCCTGGTTTTTTGGTGGAATTACAATTTGGCCATTAGGTTAATGTTTCCCCGTTTCCCAAAGATTGAGCCAAGCTTTTCATTGCAGGCGTACACTGGTCATACTGCACATGTGATGTCCCTTGACTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGATGCTAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGCACTCGTGTTTCTAAGGGAGGATCTGCACAGGTGAGATTTCAGCCAAGGATCGGACACCTTTTGGCTGCAGCAGCTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGAGTGACAGGCAGATGCAATCATTACAGGGACACTCAACAGATGTACATTCTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGATTCTGTCAAAGTGTGGTCAGTTGCCTCTGGGGAATGCATTCATGAGCTTAGTTCCAGCGGCAACATGTTTCATTCTTGCGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCTGAGAATAAATGTATGACAATACCAGCTCATGAATGTGTGATATCAGCTCTATCACAGTCACCAGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2508 0.4366 MTSGSDFTVELVMQDFDPSVSRNLRLDVYIYDYLVKKKLHNTAKTFMTEGNVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNDKHSEPAAAYLELQAQQIKAKEQQLQMQQLLMRQAQMQRRDSNHPPVGGPVNAVTTEGVLGQSTATALAAKMYEDRMKHSNAMETDTCQPLVDARMALLKSTNHPGQMVQGNSGSVTAALQQMQARTQQIPEIKSEVNMGTMQRSLPMDRSSIYEQGAMQSKSGISNAGLNPGVGGLTLKGWPLTGIDQIRPGFGAQVQKPLLQSPNQFQLLPQHQQQQLLAQVQAQGNIGNSPMFGDMDPQRLRGLARGSLNVKDGQPIANDGSIGSPMQSNSSKINMPHIQQSTSQQQQDPLHPQQPAQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMPGNLQNAAGVSKGLIMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLDDNVESFLSQDEGDGRDLFGTLKRNQSEHTTDASKGFSFSEVGSIRKSNNKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTQEEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAADSNDYKSGKYGSGETLVFWWNYNLAIRLMFPRFPKIEPSFSLQAYTGHTAHVMSLDFHPKKNDLFCSCDANNEIRFWNISQYSCTRVSKGGSAQVRFQPRIGHLLAAAAGSVVSLFDVESDRQMQSLQGHSTDVHSVCWDTNGDYLASVSQDSVKVWSVASGECIHELSSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALSQSPVTGMVASASHDKSVKIWK 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0925 835 Pfam LisH 26 50 IPR006594 GO:0005515
Lal1g0925 835 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 26 835 - -
Lal1g0925 835 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 26 835 IPR044716 GO:0003714
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 639 674 - -
Lal1g0925 835 SMART Lish 22 54 IPR006594 GO:0005515
Lal1g0925 835 Coils Coil 95 122 - -
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 518 559 IPR001680 GO:0005515
Lal1g0925 835 Gene3D - 606 751 IPR015943 GO:0005515
Lal1g0925 835 Gene3D - 752 835 IPR015943 GO:0005515
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 560 592 - -
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 639 681 IPR001680 GO:0005515
Lal1g0925 835 ProSitePatterns Trp-Asp (WD) repeats signature. 537 551 IPR019775 -
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 803 835 IPR001680 GO:0005515
Lal1g0925 835 Pfam WD domain, G-beta repeat 562 592 IPR001680 GO:0005515
Lal1g0925 835 Pfam WD domain, G-beta repeat 717 752 IPR001680 GO:0005515
Lal1g0925 835 Pfam WD domain, G-beta repeat 636 672 IPR001680 GO:0005515
Lal1g0925 835 Pfam WD domain, G-beta repeat 802 835 IPR001680 GO:0005515
Lal1g0925 835 Pfam WD domain, G-beta repeat 523 550 IPR001680 GO:0005515
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 803 835 - -
Lal1g0925 835 ProSiteProfiles LIS1 homology (LisH) motif profile. 22 54 IPR006594 GO:0005515
Lal1g0925 835 MobiDBLite consensus disorder prediction 334 431 - -
Lal1g0925 835 MobiDBLite consensus disorder prediction 346 421 - -
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 721 761 IPR001680 GO:0005515
Lal1g0925 835 SMART WD40_4 796 835 IPR001680 GO:0005515
Lal1g0925 835 SMART WD40_4 714 752 IPR001680 GO:0005515
Lal1g0925 835 SMART WD40_4 511 550 IPR001680 GO:0005515
Lal1g0925 835 SMART WD40_4 553 592 IPR001680 GO:0005515
Lal1g0925 835 SMART WD40_4 755 794 IPR001680 GO:0005515
Lal1g0925 835 SMART WD40_4 632 672 IPR001680 GO:0005515
Lal1g0925 835 SMART WD40_4 675 711 IPR001680 GO:0005515
Lal1g0925 835 Gene3D - 485 605 IPR015943 GO:0005515
Lal1g0925 835 PRINTS G protein beta WD-40 repeat signature 537 551 IPR020472 -
Lal1g0925 835 PRINTS G protein beta WD-40 repeat signature 579 593 IPR020472 -
Lal1g0925 835 PRINTS G protein beta WD-40 repeat signature 822 835 IPR020472 -
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 518 553 - -
Lal1g0925 835 SUPERFAMILY WD40 repeat-like 512 835 IPR036322 GO:0005515
Lal1g0925 835 CDD WD40 514 835 - -
Lal1g0925 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 560 601 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0925 Lal-Chr1 6690642 6704690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0925 633 834 Miscellaneous Gene Families AT5G08390 25.121 2.00e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal1g0925 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0925 - - gmx:100797756 1321.61