Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0890 ATGTTACTTTCGATCTCGCTGAACCGGATGATGAATAAGAATAAGGATCATGATAAGAAAAACAAGAAGCCTCGACTTGCTTGGTCGGAGGAGTTGCATCGCAAGTTTGTTCATGTTGTTAATCTTTTAGGAATTGAGAATGCTGTACCTAGAAAAATTCTTGCGTTGATGAATGATGAAAGACTTACAAAGCAGAATGTGGCCAGTCATCTTCAGAAATATAAACTTTCTCTCAAAAGAATTAGCAGCAACTGTGTGCCAAGTAAAAATGGTTCTATAATTGGTTGTGGACAATTTCAGAATATTTCTCCAAGTAATCCTGTTTATCAGAACGATGCTGTTCAAGAAATGCCGATGTCAACATGGCATTCCGACGAAAGCCTTGATTCGTTGTTCGATGATGTGTTTTGGGAAGACCATAATACGGACGCAACTGGTCTTTCAGATGTTATTGGTACCTCACCAAACACACTGACTCCATTGATGGATGCTGTTAATAGTAATCTTGGATCAACACAAGACTTGGTTACTGTTGCATCTCCCAGCTGCATCTCCCACGAGTCGATCGAGATCGGAGAGCTGAGACAAGAGATTGCTGCAACCAGAACCGAGACTCATCAATTAAGGGAGACGATCCAAGCTTTGAAGGCACAACAGGACATGTTGGTGCAAGTTGTTTTACAGCTTCTCCCACCCAATGTGGTGAAAGAAGCAAATTATACAAGACTCTGCAGCACAAAGCCTATACTAACTGTGAATGGAAAATTCCCTGGACCAATAATTAGAGCCTACTATGGTGAAACAGTATATGTTAATGTTCATAACAAGGGAAAATACAACATCACTTTGCACTGGCATGGAGTGGCACAGCCAAGGAATCCTTGGTCAGATGGTCCTGAATACATTACTCAGTGCCCTATCAAACATGGAGGAAAATTCAGACAGAAGTTGAAATTTTCTATTGAGGAAGGTACCTTATGGTGGCATGCTCATAGTGATTGGTTAAGAGCCACTGTCCATGGACCTATCTTTATCTATCCAAGAAAGAATGCATCCTACCCTTTTCCGAAACCCGATGCAGAGGTGCCCGTCGTATTAGGAGAATGGTGGAAGAGTGAAATCATTGATGTTCAGGAAGAGTTTCTAAGAACCGGAGGAGGACCAAATATTTCTGATGCTCTCACTATAAATGGTCAACCAGGTGACCTATATCCATGCTCAAAATCAGAAACATTCAAGTTCAATGTAGACCCTGGCAAGACTTATCTTCTGCGCATTATTAATGCTGCAATGAATGTTGTTCTCTTTTTCTCTGTTTCGAAACACAACCTCACGGTCGTTGCAGCCGATGCCAGCTACACTAAGCCATTGACAAGAGATTATATATGCATAGCTCCAGGACAAACAGTTGATGCTCTGTTACATGCAAACCAAGAGCCTAATAACTACTATATGGCTGCAAGGGTATATTCAAGTTTACCTGTACTTACCTTTGATAACACCACAACCACAGCTAGGCTTCACTATAGAGGGAACTATACTCCAACTTCATCACCTTCATTACCTAAACTTCCTTACTATAATGACACAAAAGCAGCTTATAACTACTTTGGTAGCATTAAGGGCTTACCTAAGAGATACCCTTATAAAGTCCCAACAAATATCACTAGTCACATAGTGACCACTATTTCTCTTAACTCCTTCCCATGCTCAGAAGGCCAAATCTGCGAGGGACCAAATCGAACTCGTCTCGCTGCTAGCATGAACAACATAAGTTTTCAAACCCCTAGAAGTAGCATCCTTGAAGCCTATTACAACCATGTCAATGGGGTGTATGACAGAGAATTTCCAAGTTTTCCTCCATTTATATTTAACTTCACTGCAGAATATTTGCCTCTAGATCTTGAGATACCAAGGAGAGGAACTAATGTTAAAGTTATTAAATATGGTTCAACATTGGAAGTTGTTTTCCAAGGGACAAGGTTGCTTCAAGGTATAGACCATCCTATGCATCTCCATGGCACTAGTTTCTATTTTGTAGGACAAGGATTCGGAAATTTTGATAAAGACAAAGACAGAAAAACATACAATCTCGTCAATCCTCCTCTTATAAATACAGTTCTAGTGCCGATAAATGGCTGGGCCGCTATCAGATACAGGGCATCTAATCCAGGAGTGTGGTTTCTGCATTGCCATCTAGAACGGCATCTATCTTGGGGCATGGAGACGGTGTTTATTGTGAAGAATGGAAAAGAACATCATCAAAAATTACTACCTCCACCCCCAGACATGCCTCCATGTTGA 2304 0.4093 MLLSISLNRMMNKNKDHDKKNKKPRLAWSEELHRKFVHVVNLLGIENAVPRKILALMNDERLTKQNVASHLQKYKLSLKRISSNCVPSKNGSIIGCGQFQNISPSNPVYQNDAVQEMPMSTWHSDESLDSLFDDVFWEDHNTDATGLSDVIGTSPNTLTPLMDAVNSNLGSTQDLVTVASPSCISHESIEIGELRQEIAATRTETHQLRETIQALKAQQDMLVQVVLQLLPPNVVKEANYTRLCSTKPILTVNGKFPGPIIRAYYGETVYVNVHNKGKYNITLHWHGVAQPRNPWSDGPEYITQCPIKHGGKFRQKLKFSIEEGTLWWHAHSDWLRATVHGPIFIYPRKNASYPFPKPDAEVPVVLGEWWKSEIIDVQEEFLRTGGGPNISDALTINGQPGDLYPCSKSETFKFNVDPGKTYLLRIINAAMNVVLFFSVSKHNLTVVAADASYTKPLTRDYICIAPGQTVDALLHANQEPNNYYMAARVYSSLPVLTFDNTTTTARLHYRGNYTPTSSPSLPKLPYYNDTKAAYNYFGSIKGLPKRYPYKVPTNITSHIVTTISLNSFPCSEGQICEGPNRTRLAASMNNISFQTPRSSILEAYYNHVNGVYDREFPSFPPFIFNFTAEYLPLDLEIPRRGTNVKVIKYGSTLEVVFQGTRLLQGIDHPMHLHGTSFYFVGQGFGNFDKDKDRKTYNLVNPPLINTVLVPINGWAAIRYRASNPGVWFLHCHLERHLSWGMETVFIVKNGKEHHQKLLPPPPDMPPC 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0890 767 SUPERFAMILY Cupredoxins 544 767 IPR008972 -
Lal1g0890 767 ProSitePatterns Multicopper oxidases signature 2. 730 741 IPR002355 GO:0005507
Lal1g0890 767 Pfam Multicopper oxidase 362 512 IPR001117 -
Lal1g0890 767 Gene3D - 358 543 IPR008972 -
Lal1g0890 767 CDD CuRO_3_LCC_plant 611 750 IPR034289 GO:0005507
Lal1g0890 767 SUPERFAMILY Cupredoxins 355 531 IPR008972 -
Lal1g0890 767 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 79 IPR017930 -
Lal1g0890 767 SUPERFAMILY Homeodomain-like 22 80 IPR009057 -
Lal1g0890 767 Gene3D - 575 767 IPR008972 -
Lal1g0890 767 CDD CuRO_1_LCC_plant 234 347 IPR034288 GO:0005507
Lal1g0890 767 PANTHER LACCASE-15 234 767 - -
Lal1g0890 767 ProSitePatterns Multicopper oxidases signature 1. 725 745 IPR033138 -
Lal1g0890 767 Pfam Myb-like DNA-binding domain 26 75 IPR001005 -
Lal1g0890 767 Pfam Multicopper oxidase 638 750 IPR011706 GO:0005507|GO:0016491
Lal1g0890 767 SUPERFAMILY Cupredoxins 234 371 IPR008972 -
Lal1g0890 767 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 76 IPR006447 GO:0003677
Lal1g0890 767 Coils Coil 191 218 - -
Lal1g0890 767 PANTHER MULTI-COPPER OXIDASE 234 767 IPR045087 -
Lal1g0890 767 Gene3D - 235 355 IPR008972 -
Lal1g0890 767 Gene3D - 19 82 - -
Lal1g0890 767 TIGRFAM laccase: laccase 235 767 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lal1g0890 767 CDD CuRO_2_LCC_plant 362 509 IPR034285 -
Lal1g0890 767 Pfam Multicopper oxidase 235 349 IPR011707 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0890 Lal-Chr1 6341820 6348649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0890 19 81 G2-like Transcription Factor Family AT5G59570 63.492 1.62e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal1g0890 Cu-oxidase 7.2e-40 CL0026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0890 K05909 K19791 gmx:100788550 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0890 1 6341820 6348649 Lal1g0890 1 6341820 6348649 ECH
Lal1g0890 1 6341820 6348649 Lal13g0090 13 592227 594675 PCT
Lal13g0090 13 592227 594675 Lal1g0890 1 6341820 6348649 PCT