Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0876 ATGGCTAGTTCTAGATCTAGAGAAAGGTTGATTGATTGTCTTCAGTTTTCGTCATTGTTCTGGCCTCCACCACTTGATGATCAACAAAGAAAGGCAAACCGTGGAGGCTATACACTTGTTATGACGATTGATGGAAAGATATTGAAGAAATCAAAAGGACTTGCACATATTCGAGTAAAGGATCAAGTTGCTGCGTATGTTGAGTACTTTGGTCAATTTACATCTGAACAATTTGATGATGATATTGCAAAGTTGATCCACAGCCATTATCCTTCCAGGGAATTGCTCCTCTTTGATCATGTTTTGGCGGTACTTGTTCTTCATCGTCCAGAGCACGGGCATGCAGTTGTGCATCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGACCAGTCCTCCATTTGCTTCTTTCATATCTTTAGTCTGCCCAAAAAGTGAGAATGATTACTCAGAACAATGGGCTCTGGCATGTGGTGAAATCTTGCGTATTTTAACTCATTACAATCGCCCCATATACAAAATGGAAAGACAATATTGTGAAACAGAAAGAAGTAGTGACGAAAGCCATGCAACAAGTAGTGATTTTCTAGAGAGGGAGTCTGGCCATAATTATTTGATGCAACAGGATAAGAAACCTATAAGGCCCTTGACACCTTGGATTACTGATATATTGCTAGCTGCACCTTTAGGCATTAAAAGTGACTATTTCCGGTGGTGCAGTGGTATTATGGGAAAATATGCTGCTGGAGAACTCAAGCCACCTACAACTGCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACCGATGCCTTCAACTCCAAGGTGGGCAGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGAAGAAGTTGCTAGCTATGATACTGCTACTTTAACAGCAGCTGCTGTCCCTGCACTTCTACTTCCTCCTCCAGCAACAGCTTCGGATGAAGAACTTATTGCTGGATTACCAGCTCTGGAACCATATGCACGATTATTTCATAGATATTATGCTCTTGCTACTCCAAGTGCCACACAAAGACTTCTTCTCGGGCTTCTTGAAGCACCCCCATCTTGGGCTCCAGATGCACTTGATGCGGCTGTGAAGCTTGTAGAGCTTCTACGAGCTGCTGAATATTATGATTCTGGAATAAGGCTTCCTAGAAATTGGATCCATTTTCATTTCTTGCATGCTATAGGGACTGCAATGTCCATAAGAGCTGGCTTAGCTGTTGATGCTGCAGCCGCTTTGCTTTTCCGTATACTTTCACAGCCTGCATTACTTTTCCCCCCACTTAGGCAAGTTGATGGAGTTGAAGTTCAACATGAACCATTGGGTAGCTATATTTCTTCCTACAGAAAGCAGATTGAAGCTCCTGCGGCTGAGGAAACTATAGAGGCTACAGCCAAAGGCATAGCGTCAATGCTTTGTACCTATGGTCCAGAGGTTGAATGGAGAATTTGCACCATTTGGGAAGCTGCTTATGGCTTGATTCCCTTAAACTCCTCATCAGTTGATCTTCCGGACATTGTAGTTGCAACCCCACTGCAACCTCCCATACTCTCATGGAATTTGTACATACCCCTGCTTAAGGTTCTGGAGTATCTTCCTCATGGAAGTCCATCAGAGGCGTGTCTAATGAAAATATTTGTTGCTACAGTGGAATCTATTCTTCAGAGGACATTTCCAGATGAGTCCACTAGTGAACAAAAAAGGAAAGTTAGATATCTCTCTGGTACAGGTTCTGCCTTCAAAAACCTTGCTGTAGCAGAACTTCGTACTATGGTTCATTCACTTTTCGTAGAATCATGTGCATCTGTAGAACTTGCTTCACGCCTACTATTTGTTGTCTTAACTGTCTACATTAGTCATGAAGCCCAATTCAATGGAAGCAAGATGCCAAGAGGTGAGAATAGTTATCCAAGTGAGGAAATGATTGAGGAATTACAAGGAATATCGGAAAGCCATAAAGAAAAGAAAAATAGGAAAACGAAGAAGCAAGGTCCAGTGGCAGCATTTGATTCTTATGTTCTGGCTGCTGTTTGTGCTCTTGCTTGTGAGCTTCAGTTGTTCCCTTTGGTTTCCCAAGGGAGCAATCATTCAATCTCCAACAATGTGCAAGACGGCATAGATTCAGCAAGAAACCATACTCACAGAATTTTAGCAATTTTAGAGGCATTATTTTCATTGAAGCCATCTTCTGTTGGCACCCCATGGAGCTGCAGCTCAAATGAAATTGTTGCAGCAGCTATGGTAGCTGCACATATTTCTGAACTATTTATACGGTCAAAGGCATGTATGCATGCTCTGTCCATTTTAATGTCTTGCAAATGGGACAGTGAAATTCACTCCAGGGCATCATCATTGTATAAACTCATAAATTTTCACAGCAAAGCTGTTGCATCCATAGTTAACAATGTGGAGCCACTGGGAGGGACCGTAATTCAGATACTTGTTAGTAAAGACTCCCTTGATAGTAGAAAAGAAGATCGCTGTGAAAGTAGTAGCTTCTTTGGTCCTGGGAAGACATCTCTCTCACCTTCTAAGGACTCAGCCCCCTCAGAACTACACAAATCTGAGAAAGCATTATGTTCAAATGAAGTATCAGGATGTACCTCTAGAAAAGGTGTTACAGATTTCCCACTGATTGCTTCTGACATAGCAAACTTTCTCACAGTGGACAGGCATATAGGATTCAATTGCACCGACCAGATTTACCTTAGATCTATGCTAGCAGAGAAACAAGAGTTATGTTTCTCTGTAGTGTCTCTTTTGTGGCACAAGTTGATTGCATCTCCTGAGACTCAACCTTGTGCAGAAAGCACTTCTGCTCAACAGGGGTGGAGACAGGTTGTTGATGCATTATGCAATGTTGTATCAGCATCACCAATGAAATCGGCTACGGCAGTTGTTCTTCAGGCAGAGAGGGAATTGCAGCCCTGGATTGCCAAAGATGATGACCAAGCTCAAAAGATGTGGAGAATGAATAAGCGGATTGTAAAATTGATAGTTGAACTATTGAGGAATCGCGACAGTGCAGAATCATTGGTGATAGTGGCAAGCGCATCAGATTTACTACTACGAGCCACAGATGGGATGTTGGTGGATGGAATAGATTGCACCTTACCACAGCTAGAGTTTATGAAGTCATTGTTTCATTATCCTTTACTGTGTCCTAATATGAGCACTGTAAAGGAGGATTTGGTATTTCATATGTTTTCAGGTTTAACTTTATCCTTAAGATTTACTGATATTCATAGTTCAAGTTTTGGTACAATTGGCCAGCTACTGGAGGCAGCGGCACGAGCAGTTCGGCCAGTGCTTGAGTTAGGAGAATCTGGACTGGAGGTGGCGAATGGCCTTTCAAACCTGTTAAAGCGTCGCCTACCAGTTACAATCAGATGCCTTTCTCATCCAAGTGCGCATGCCCGTGCTCTGAGCACTTCAGTTCTTCGTGCCGTGTTACGTATCATTTCAATCAGATCTAGTCTTTACCCGCCACGAAAAAATGGCATCCATGACCAATGCTTCAATTTGAATTTCATCGACTGGCAAGCTCACATAGAAAAATGCTTGACATGGGAAGCTCACAGCCGACTCGGAAATGGATTGTCTATCGAGTTTCTTGACACCACTGCTAAAGAATTAGGCTGTCAAATTTCCATTACCGAAGTGTTTACTACTCGTAGAGATGATAATGAAAATTGGACTCGTGAATTTCCATTTGAACTCAACCCAAATTTAACAGTTGAAAATCGTTGTGTCAATTTTTATGTTCAGTCTTTGGTTGCAAACGAAGATTTTCAGCACATTCTGCGTGTGTTGAATACCAACGTTGATGGGAAGCAGAAGATAATGTTTGCCCTTACCTCAATCAAAGGTATTGGAAGACGATTGGCTAACATTGCCTGCAAAAAAGCTGATGTAGACATGAACAAGAGAGCTGGTGAATTGACTGCTGCTGAATTGGACAATATCATGACTGTGATTGCGAACCCTCGGCAATTCAAGATTCCGGATTGGTTTTTGAATAGAAAGAAGGATTACAAGGATGGGAAGTATTCTCAAGTAGTGTCAAATGCACTGGATATGAAGCTGAGGGATGATTTGGAACGTTTGAAGAAAATCAGAAACCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGCCAGCATACTAAAACTACCGGTCGCAGGGGTAAGACTGTTGGTGTCTCTAAGAAGCGTTGA 4254 0.4224 MASSRSRERLIDCLQFSSLFWPPPLDDQQRKANRGGYTLVMTIDGKILKKSKGLAHIRVKDQVAAYVEYFGQFTSEQFDDDIAKLIHSHYPSRELLLFDHVLAVLVLHRPEHGHAVVHPIISCIIDGTLVYDKTSPPFASFISLVCPKSENDYSEQWALACGEILRILTHYNRPIYKMERQYCETERSSDESHATSSDFLERESGHNYLMQQDKKPIRPLTPWITDILLAAPLGIKSDYFRWCSGIMGKYAAGELKPPTTASSRGSGKHPQPMPSTPRWAVANGAGVILSVCDEEVASYDTATLTAAAVPALLLPPPATASDEELIAGLPALEPYARLFHRYYALATPSATQRLLLGLLEAPPSWAPDALDAAVKLVELLRAAEYYDSGIRLPRNWIHFHFLHAIGTAMSIRAGLAVDAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGSYISSYRKQIEAPAAEETIEATAKGIASMLCTYGPEVEWRICTIWEAAYGLIPLNSSSVDLPDIVVATPLQPPILSWNLYIPLLKVLEYLPHGSPSEACLMKIFVATVESILQRTFPDESTSEQKRKVRYLSGTGSAFKNLAVAELRTMVHSLFVESCASVELASRLLFVVLTVYISHEAQFNGSKMPRGENSYPSEEMIEELQGISESHKEKKNRKTKKQGPVAAFDSYVLAAVCALACELQLFPLVSQGSNHSISNNVQDGIDSARNHTHRILAILEALFSLKPSSVGTPWSCSSNEIVAAAMVAAHISELFIRSKACMHALSILMSCKWDSEIHSRASSLYKLINFHSKAVASIVNNVEPLGGTVIQILVSKDSLDSRKEDRCESSSFFGPGKTSLSPSKDSAPSELHKSEKALCSNEVSGCTSRKGVTDFPLIASDIANFLTVDRHIGFNCTDQIYLRSMLAEKQELCFSVVSLLWHKLIASPETQPCAESTSAQQGWRQVVDALCNVVSASPMKSATAVVLQAERELQPWIAKDDDQAQKMWRMNKRIVKLIVELLRNRDSAESLVIVASASDLLLRATDGMLVDGIDCTLPQLEFMKSLFHYPLLCPNMSTVKEDLVFHMFSGLTLSLRFTDIHSSSFGTIGQLLEAAARAVRPVLELGESGLEVANGLSNLLKRRLPVTIRCLSHPSAHARALSTSVLRAVLRIISIRSSLYPPRKNGIHDQCFNLNFIDWQAHIEKCLTWEAHSRLGNGLSIEFLDTTAKELGCQISITEVFTTRRDDNENWTREFPFELNPNLTVENRCVNFYVQSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIACKKADVDMNKRAGELTAAELDNIMTVIANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0876 1417 ProSitePatterns Ribosomal protein S13 signature. 1386 1399 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal1g0876 1417 MobiDBLite consensus disorder prediction 256 276 - -
Lal1g0876 1417 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 7 37 - -
Lal1g0876 1417 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 59 1055 - -
Lal1g0876 1417 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 1101 1228 - -
Lal1g0876 1417 Gene3D 30s ribosomal protein s13, domain 2 1357 1407 IPR027437 -
Lal1g0876 1417 Pfam Ribosomal protein S13/S18 1279 1407 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal1g0876 1417 PANTHER PROTEIN GIGANTEA 59 1055 IPR026211 GO:2000028
Lal1g0876 1417 PANTHER PROTEIN GIGANTEA 1101 1228 IPR026211 GO:2000028
Lal1g0876 1417 PANTHER PROTEIN GIGANTEA 7 37 IPR026211 GO:2000028
Lal1g0876 1417 MobiDBLite consensus disorder prediction 837 860 - -
Lal1g0876 1417 SUPERFAMILY S13-like H2TH domain 1278 1417 IPR010979 GO:0003676
Lal1g0876 1417 ProSiteProfiles Ribosomal protein S13 family profile. 1280 1410 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal1g0876 1417 PRINTS Protein GIGANTEA signature 6 24 IPR026211 GO:2000028
Lal1g0876 1417 PRINTS Protein GIGANTEA signature 308 326 IPR026211 GO:2000028
Lal1g0876 1417 PRINTS Protein GIGANTEA signature 332 352 IPR026211 GO:2000028
Lal1g0876 1417 PRINTS Protein GIGANTEA signature 357 376 IPR026211 GO:2000028
Lal1g0876 1417 PRINTS Protein GIGANTEA signature 376 396 IPR026211 GO:2000028
Lal1g0876 1417 PRINTS Protein GIGANTEA signature 408 430 IPR026211 GO:2000028
Lal1g0876 1417 PRINTS Protein GIGANTEA signature 480 503 IPR026211 GO:2000028
Lal1g0876 1417 PRINTS Protein GIGANTEA signature 540 561 IPR026211 GO:2000028
Lal1g0876 1417 Hamap 30S ribosomal protein S13 [rpsM]. 1277 1417 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal1g0876 1417 MobiDBLite consensus disorder prediction 843 858 - -
Lal1g0876 1417 Gene3D - 1266 1345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0876 Lal-Chr1 6189015 6205023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0876 1267 1417 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 94.702 7.29e-100 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0876 K12124 - gmx:100781641 1722.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0876 1 6189015 6205023 Lal1g0876 1 6189015 6205023 ECH