Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0874 ATGGAACAAGGAGAAGTTGCAATACAAGGTTCTTCTGTTGCTTCAGGTTATATCAGAGAAAGAGAGTACACAGAAATGGTTTCAGCTTTGACTCGTGTGGGGTCAGGATCAGGCCAGAGAAGAAGTGAATGGGTTCAGATTCATGGAAGTGGTGGTTCATTGGTTGGGCAAAAAAGAGAGCGTGAAGAAGAGAGTAGTGGTTCTCATCACTTCATGCAACAAGCTCTTCCTAGACACTTCAGAACCATTGGTCACTTCAGGATACCACTGACACAAACAGAGTTATCATCAGAAGAAGCTGCCACCACCATCATTACAACCACAACGGCGGCGACACCGTCGAGTGAAACGGCTTCAAATGAAGAGACAAGAGAGAGGAGAAGGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATTCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGTACATTTGACACAGCAGAAGCTGCAGCAAGAGCTTATGATGAAGCTGCATTAAGGTTCAGAGGCAACAAAGCAAAGCTAAATTTCCCTGAAAATGTTACAGCACTGCAACCACCACTTCACACTTTTCCGGCCACCACTAGGCTAGCGACACCGCCGCAATTGGCGCCGAGGCTCATGCAGCCGCAACAGGAGCCGTTACTTCAAGGGTCCTTTGATTTGATCAGAGATTATAGGGAATATTCTCAACTTCTTCAGAGTTCTGGTGATTTTCAACAACAACAATTACAACTACAACACCAACCTTCTAGTTTGTTGCAGCAATGGTACTATACTTCACAATTGGCTGAACTTCAATCATCTTCATTGTTATCATCATCTCCTTCTTTGTCTTCTTCTATGTCAGCAAATGCATCATTTTCACCATCCACTCAATTTTCCTCTGCTTCATTTCCCATGTATTCTACTCAACAAATGGGCAATTTCCGGCCACCGGGAAACCAAACTCAAGACGGCGGTGGAGGCACCAGATTGGAGTATCCTTCGTCAACTTGGTCAGATACCAGTGGCTATCCGCCACCTCCCAGTTGA 1056 0.4593 MEQGEVAIQGSSVASGYIREREYTEMVSALTRVGSGSGQRRSEWVQIHGSGGSLVGQKREREEESSGSHHFMQQALPRHFRTIGHFRIPLTQTELSSEEAATTIITTTTAATPSSETASNEETRERRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTALQPPLHTFPATTRLATPPQLAPRLMQPQQEPLLQGSFDLIRDYREYSQLLQSSGDFQQQQLQLQHQPSSLLQQWYYTSQLAELQSSSLLSSSPSLSSSMSANASFSPSTQFSSASFPMYSTQQMGNFRPPGNQTQDGGGGTRLEYPSSTWSDTSGYPPPPS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0874 351 SUPERFAMILY DNA-binding domain 128 186 IPR016177 GO:0003677
Lal1g0874 351 MobiDBLite consensus disorder prediction 310 351 - -
Lal1g0874 351 ProSiteProfiles AP2/ERF domain profile. 128 185 IPR001471 GO:0003700|GO:0006355
Lal1g0874 351 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 20 312 - -
Lal1g0874 351 Pfam AP2 domain 128 177 IPR001471 GO:0003700|GO:0006355
Lal1g0874 351 SMART rav1_2 128 191 IPR001471 GO:0003700|GO:0006355
Lal1g0874 351 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Lal1g0874 351 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Lal1g0874 351 CDD AP2 136 187 IPR001471 GO:0003700|GO:0006355
Lal1g0874 351 PANTHER DNA-BINDING DOMAIN 20 312 IPR044808 GO:0003700|GO:0009873
Lal1g0874 351 MobiDBLite consensus disorder prediction 310 342 - -
Lal1g0874 351 MobiDBLite consensus disorder prediction 50 69 - -
Lal1g0874 351 MobiDBLite consensus disorder prediction 109 130 - -
Lal1g0874 351 Gene3D AP2/ERF domain 127 187 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0874 Lal-Chr1 6159177 6161914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0874 114 202 AP2-EREBP Transcription Factor Family AT2G33710 66.292 9.76e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal1g0874 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0874 - - gmx:100804843 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0874 1 6159177 6161914 Lal1g0874 1 6159177 6161914 ECH