Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0854 ATGTCCTTCCGCAGCATTGTTCGTGATATAAGGGATGGATTTGGAAGCTTGTCGAGGCGGAGTTTTGAGGTAAGGCTTCCTGGTCATCACAAGGGAAAGTCACATAGTTCAGTCCACGAGTTGGAGGAACAACCACCACTTGTACAAAACAGCCGATGGAGTAGCCTTCCACCCGAGCTTCTTCGCGATGTAATTAAAAGATTGGAAGCGAGTGAGAGTACATGGCCCGCTCGTAAGCATGTAGTTGCATGTGCTGCTGTGTGTAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCTTGAGTTCAGCGGGAAGATCACTTTTCCTGTGTCCCTTAAGCAGCCTGGTGCTAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCAAAAATGACTTACCACCTATTCCTCTGTCTCAGTCCTGCGTTGCTTGTTGAAAATGGGAAGTTTCTACTTTCTGCAAAACGGACCAGAAGAACAACCTACACAGAGTATATCATATCAATGGATGCAGATAATATATCAAGATCTAGCAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGAACCAAATTTATAATTTGCGATACGCAGCCTCCCTATAACAACGCTCAGTTGTCTCCTCCAGGACGAAGCCGTAGGTTTAATTCAAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAGCTATAATATTGGTCAGGTTTCCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCCCGCAAGGTGCACTGCACTATGAATTCAATCCCGACATCAGCCCTTGAGCCTGGTGGCACTGTCCCAGGCCAGCCAGAGCTCCTTTCCTGCCCCCTTGAGGATTCTTTCCGGAGCATATCCTTCTCAAAATCGATTACTGACAGCGCTAGGTTCTCTGATATATACGGGGCTGGCAATATAGGCGACGAGGGGAAGGACAACCAACCTCTAATTCTCAAGAACAAGTTACCAAGGTGGCATGAGCAGTTGCAATGCTGGTGCCTCAACTTCAAGGGAAGGGTGACTGTTGCCTCTGTCAAGAACTTCCAGCTGATCGCCGATACACAGCCTGCGACTGATTCTCATATTCCGTCTCAGCCGACACAATCTGACTATGACAAGGTTATTCTTCAGTTTGGCAAGGTTGGTAAGGATATGTTTACTATGGACTATAGATACCCCCTATCTGCATTTCAGGCTTTTGCAATTTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 1263 0.4608 MSFRSIVRDIRDGFGSLSRRSFEVRLPGHHKGKSHSSVHELEEQPPLVQNSRWSSLPPELLRDVIKRLEASESTWPARKHVVACAAVCKSWREMCKEIVSSLEFSGKITFPVSLKQPGARDGTIQCFIKRDKSKMTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIICDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIGQVSYELNVLGTRGPRKVHCTMNSIPTSALEPGGTVPGQPELLSCPLEDSFRSISFSKSITDSARFSDIYGAGNIGDEGKDNQPLILKNKLPRWHEQLQCWCLNFKGRVTVASVKNFQLIADTQPATDSHIPSQPTQSDYDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0854 420 Gene3D Tubby Protein; Chain A 112 414 IPR025659 -
Lal1g0854 420 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lal1g0854 420 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lal1g0854 420 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lal1g0854 420 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Lal1g0854 420 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Lal1g0854 420 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Lal1g0854 420 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Lal1g0854 420 Pfam Tub family 114 415 IPR000007 -
Lal1g0854 420 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 420 - -
Lal1g0854 420 Gene3D - 48 102 - -
Lal1g0854 420 MobiDBLite consensus disorder prediction 210 230 - -
Lal1g0854 420 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
Lal1g0854 420 PANTHER TUBBY-RELATED 1 420 - -
Lal1g0854 420 ProSitePatterns Tub family signature 2. 405 420 IPR018066 -
Lal1g0854 420 SUPERFAMILY Tubby C-terminal domain-like 103 420 IPR025659 -
Lal1g0854 420 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Lal1g0854 420 Pfam F-box domain 53 99 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0854 Lal-Chr1 5966106 5976266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0854 1 420 TUB Transcription Factor Family AT1G76900 67.473 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal1g0854 Tub 3.9e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0854 K19600 - rcu:8283226 701.434