Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0843 ATGGAAGCAAAAGCAACAACTAATAATAATAATAATAATAATAATAATAACAATGAGAAGAAGAAGAAGATTACTATTACACCATGCTGTAACAAGATTGGGTTGAAGAAAGGACCATGGAGTCGTGAAGAAGATGAAGTGTTATCAGATTTCATAAAGAAAGAAGGAGAAGGGCGTTGGAGAACACTTCCAAAGCGAGCTGGCCTCCTCCGCTGTGGGAAGAGTTGCCGCCTCCGTTGGATCAACTACCTCCGCCCTTCCCTTAAGCACGGCCACATTGCCTCCGACGAAGAAGATCTCATCCTCCGCCTCCACCGCCTCCTTGGTAACCGGTGGTCTTTGATAGCTGGGAGAATTCCGGGAAGAACCGATAATGAAATAAAGAACTATTGGAACACTCATCTAAGCAAGAAGCTAATCAGCCAAGGAATTGATCCTAGAACACATAAGCCTCTATTCAACTCTTGTTCTAATTCCACTACCACTCCACTTTCTAATCATTCACCCAAACTAATTCCTCCTACTCCAATAAACCCTATTCCTTCTCCTCATCATCACATTAATATTTTCAATCAAGATTTTGATCCCAACATAACTACTACTACCCATGATTATTTGGATCAACATCAAGCAACTACTCCCAATGTAACCAATGATAATGTTTCTGAAATTGGTTTAATTATTAGAAGCAATGAGCATCTACTTTGCTCCAACAATGAGGATCATTGTAGTGATGATGATGTTTTCTCTTCCTTCCTTAATTCCTTGATCAATGAAGATCATGGTCCTTCAGCTTGTGACAATGATCTTTCTGTCCCTGCTTATGGCAATGGTGTTTGA 840 0.4024 MEAKATTNNNNNNNNNNNEKKKKITITPCCNKIGLKKGPWSREEDEVLSDFIKKEGEGRWRTLPKRAGLLRCGKSCRLRWINYLRPSLKHGHIASDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLFNSCSNSTTTPLSNHSPKLIPPTPINPIPSPHHHINIFNQDFDPNITTTTHDYLDQHQATTPNVTNDNVSEIGLIIRSNEHLLCSNNEDHCSDDDVFSSFLNSLINEDHGPSACDNDLSVPAYGNGV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0843 279 MobiDBLite consensus disorder prediction 1 20 - -
Lal1g0843 279 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Lal1g0843 279 SMART sant 89 137 IPR001005 -
Lal1g0843 279 SMART sant 36 86 IPR001005 -
Lal1g0843 279 CDD SANT 39 84 IPR001005 -
Lal1g0843 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Lal1g0843 279 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Lal1g0843 279 Pfam Myb-like DNA-binding domain 96 135 IPR001005 -
Lal1g0843 279 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Lal1g0843 279 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 20 261 - -
Lal1g0843 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Lal1g0843 279 SUPERFAMILY Homeodomain-like 34 131 IPR009057 -
Lal1g0843 279 CDD SANT 96 135 IPR001005 -
Lal1g0843 279 Gene3D - 94 155 - -
Lal1g0843 279 Gene3D - 36 89 - -
Lal1g0843 279 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 20 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0843 Lal-Chr1 5844219 5846041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0843 27 263 MYB Transcription Factor Family AT3G13540 58.228 1.47e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g0843 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0843 K09422 - gmx:100782308 281.182