Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0824 ATGGTGGAAAAAGAAAAAGCAAAATACAGAAAGGGGTTATGGTCACCTGAAGAAGACAATAAGCTCAGAAATCATATCCTTATGTTTGGTCATAGCTGCTGGAGCTCTGTCCCCATTAAGGCAGGGTTGCAAAGGAATGGAAAAAGTTGCAGACTAAGGTGGATAAACTACCTAAGGCCAGGATTAAAGAGAGGGATTTTCAGCAAGCAGGAAGAGGAGACAATTATGTCCTTTCATAAAATGTTAGGAAACAAATGGTCTCAAATAGCACAACATTTGCCGGGAAGGACAGACAACGAGATAAAAAACTTCTGGCATTCATATTTGAAAAAGAAAGTAGACAAAACTAAGGAAATGGAATCTCATAAACAACTTCATTATGCTAACTCAAGCTCAGATACAATAGATTATTCACTCTCTCCCCAGAAACTTGCATCTCAATATGCAGATTATGGATTGTTAGAAAACATAGACAAATCAGCATCACATTGTGATAATTCTTATCCACAAAATTATAACTTTTCCAAGGAATCTTGTCATAGCTCATTACCAAAAGTGTTATTTTCTGAGTGGCTTTCATTGGATCATGTAAATGGTGGGAACTCTATAAACTCAGATGACTCTTTATTAGGGTATGGGTTTGATCAAAATTCAAGTTTTCAAGAAACCCTAATACAGATTTCAGAAGGACCCTTTGGTGGAGAGTATCATAATAGTATTGTAACTAGTTCAACCACTGAGGTGTATAATTCAAAGGTTATGTTTTCAAATCAAGTGAATGGAAGTGACTTCATCCATTGTATATATGGAGCTGATTTGTATAGCAATTTCAGCCTCAACAATGATACAATGTATATATGA 861 0.3566 MVEKEKAKYRKGLWSPEEDNKLRNHILMFGHSCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGIFSKQEEETIMSFHKMLGNKWSQIAQHLPGRTDNEIKNFWHSYLKKKVDKTKEMESHKQLHYANSSSDTIDYSLSPQKLASQYADYGLLENIDKSASHCDNSYPQNYNFSKESCHSSLPKVLFSEWLSLDHVNGGNSINSDDSLLGYGFDQNSSFQETLIQISEGPFGGEYHNSIVTSSTTEVYNSKVMFSNQVNGSDFIHCIYGADLYSNFSLNNDTMYI 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0824 286 CDD SANT 14 58 IPR001005 -
Lal1g0824 286 CDD SANT 67 109 IPR001005 -
Lal1g0824 286 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lal1g0824 286 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Lal1g0824 286 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Lal1g0824 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Lal1g0824 286 SMART sant 10 60 IPR001005 -
Lal1g0824 286 SMART sant 63 111 IPR001005 -
Lal1g0824 286 Gene3D - 66 134 - -
Lal1g0824 286 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Lal1g0824 286 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Lal1g0824 286 Gene3D - 13 63 - -
Lal1g0824 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Lal1g0824 286 PANTHER MYB TRANSCRIPTION FACTOR 2 280 - -
Lal1g0824 286 PANTHER MYB DOMAIN PROTEIN 55 2 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0824 Lal-Chr1 5685515 5689419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0824 4 272 MYB Transcription Factor Family AT3G48920 42.857 1.41e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g0824 Myb_DNA-binding 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0824 K09422 - gmx:100803537 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0824 1 5685515 5689419 Lal1g0824 1 5685515 5689419 ECH