Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0822 ATGGGGGTGAAGCATTTGTGGGATATTCTCGAATCATGCAAGAAAACGGTGCCGCTTCATCATCTACAGAATAAGAAGGTGTGCGTGGATTTGTCTTGTTGGATGGTGCAGCTTCAGAATGTGAACAAATCTTACATTGCTTCTAAAGATAAAGTTTACCTCAGAGGCCTCTTTCACCGCCTCAGAGCTCTCATTGCTCTCAATTGCAAAGTTGTTTTTGTTTCAGTTTATGCACATGATTTAGGAATGCCGAGCAAGTATGGATCTGAATGTAATGCAATAATAGGGTGGCTCATTGCACGAGATGGGTCAATTCCTGCCATTAAATTAACAACTTATAGGCAACGCTTAAACGGCAGAAAGGAGGTATCACAGAAGGAGAATGATGCTAACCCAAACAATGTTCCATCATTATCATATAATGACACTAACTCGGAGAAAGTAACATCATTACGGAGAAATGCGGGGTCTGAGTTTTCTTGCATGATAAAAGAGGCTAAAGTCTTGGGGATGGCTCTTGGGGTCTCTTGTTTGAACGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTATTGAACAATGAGATGTTGTGTGATGGATGTTTCAGTTCAGATTCAGATATATTCCTTTTTGGTGCAAGGACAGTGTACAGGGATATCTGCCTTGGGGATGGTGGATATGTTGTTTGTTATGAGATGGCAGACATCGAAAGTAAACTTGGATTCGGAAGGGACTCATTGATCGCTCTCTCCTTACTTCTCGGCAGTGACTATTATCCTGGAGTTCATGGTCTGGGTCCAGAAACTGCTTGTCAGATAGTCAAATCAATTGGGGACAAACTCATTCTTCAAAAGTTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGTGCTAAGAACAATTTAGAGAGGAATGATACCATTTTGCAAGTTATCGATGCTTATATGAAGCCAAAATGCCACCCAGCAGATTCAGATATTGTGCAGAGGGCTTTTACTCATTATCCATTTCAACAAATTAAACTCCAGCAGATATGCACCGAATTCTTTGAGTGGCCTTCAGAGAGAACAGATGGCTATATCCTTCCCAGTATTGCTGAAAGAGATTTACGGAGATTTGCTAATTTGCGGTTAACCTCATCTGAAGTTGGACTGAACCCTCCTCTACATCAGATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAAACCCGAAGAGTTCAAGGGAAAGAATGCTATGAAGTTTCTTGGGGAGAAATGGATGGACTTGAAACTTCAATAGTGCCTGCAGATCTTTTACAAAGTGCCTGTCCCGAAAAGATTTTGGAGTTCGAGGAGAAAAAGGGTCAACGGAAGAAAGTCAAGAAACAAAATATTCAGAAAAGAAGACCAAAGAAAAATGAAACTTTTGAGCTTGATCTTAAACTTCAGAATCTATTGATAGATATCAATTTTGGTGACCAACACAACCACAATGCTTCTGAACCTGATTCTTCAAGAATGACACTAGGAGTTGCACCAACCACAATGCCTATGGCTGAAGCTAATCTTAGTACCACAGAGTTGTTGCATCAATCACTTGACATAGAACTTAACCATTGGAGTCAGAATTTGAGCAACATATCAAGTAGCAGTAATAAGGCTTCTTACAGTTTAGATAAAAATGAAGTCATTGATCTTCTGAGCCCTTCACCACAACCTAAACAATCACATATTTCTTCAAAATTTCAACAATCAAGTGACCAACTTATTGATGTGATTAATTTGAGTGATTCAGAATATGACATGTCACCTGAACACAATGAAAAAGCAAAGGAGTTGAGATTGTTCTTATCAAGTATTAGAAACAATATTCACTGA 1863 0.3951 MGVKHLWDILESCKKTVPLHHLQNKKVCVDLSCWMVQLQNVNKSYIASKDKVYLRGLFHRLRALIALNCKVVFVSVYAHDLGMPSKYGSECNAIIGWLIARDGSIPAIKLTTYRQRLNGRKEVSQKENDANPNNVPSLSYNDTNSEKVTSLRRNAGSEFSCMIKEAKVLGMALGVSCLNGIEEAEAQCALLNNEMLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIESKLGFGRDSLIALSLLLGSDYYPGVHGLGPETACQIVKSIGDKLILQKFASEGLGWVKKRKGAKNNLERNDTILQVIDAYMKPKCHPADSDIVQRAFTHYPFQQIKLQQICTEFFEWPSERTDGYILPSIAERDLRRFANLRLTSSEVGLNPPLHQIPVKCPVSEIIKTRRVQGKECYEVSWGEMDGLETSIVPADLLQSACPEKILEFEEKKGQRKKVKKQNIQKRRPKKNETFELDLKLQNLLIDINFGDQHNHNASEPDSSRMTLGVAPTTMPMAEANLSTTELLHQSLDIELNHWSQNLSNISSSSNKASYSLDKNEVIDLLSPSPQPKQSHISSKFQQSSDQLIDVINLSDSEYDMSPEHNEKAKELRLFLSSIRNNIH 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0822 620 SUPERFAMILY Chromo domain-like 398 453 IPR016197 -
Lal1g0822 620 Gene3D - 396 463 - -
Lal1g0822 620 MobiDBLite consensus disorder prediction 121 145 - -
Lal1g0822 620 CDD H3TH_XPG-like 244 287 - -
Lal1g0822 620 CDD PIN_GEN1 2 239 - -
Lal1g0822 620 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 510 - -
Lal1g0822 620 Gene3D - 93 240 - -
Lal1g0822 620 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 510 IPR006084 -
Lal1g0822 620 SMART xpgineu 171 241 IPR006086 GO:0004518
Lal1g0822 620 Gene3D - 1 76 - -
Lal1g0822 620 Gene3D - 242 304 - -
Lal1g0822 620 Pfam XPG N-terminal domain 1 74 IPR006085 GO:0004518
Lal1g0822 620 MobiDBLite consensus disorder prediction 128 145 - -
Lal1g0822 620 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lal1g0822 620 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 97 116 IPR006084 -
Lal1g0822 620 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 170 187 IPR006084 -
Lal1g0822 620 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 191 211 IPR006084 -
Lal1g0822 620 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 246 261 IPR006084 -
Lal1g0822 620 SMART xpgn3 1 87 IPR006085 GO:0004518
Lal1g0822 620 Pfam XPG I-region 174 256 IPR006086 GO:0004518
Lal1g0822 620 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 241 377 IPR036279 -
Lal1g0822 620 SUPERFAMILY PIN domain-like 2 256 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0822 Lal-Chr1 5658020 5677251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0822 1 277 Core DNA Replication Machinery Family AT5G26680 24.742 1.56e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0822 K15338 - gmx:100806919 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0822 1 5658020 5677251 Lal1g0822 1 5658020 5677251 ECH