Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0802 ATGGACGTAGATGGGGGAAACAAGCGCGTGTTCAACCGACTCGGTGGAACCGCGGGTGGCCCAAGAAACCAGAAAGTGTGTTATCATTGGCAAGCGGGGAAGTGCAATCGTCACCCATGCCAGTTTCTTCATAGCGAGTTGCCTCCTCACAACTCCAATGGCGCCTTTTCCAACAATCCTTATGGGTCTGAGGAAAATTTAAGCTTTAATTGTCCACCGCGCCGAACATCGAATTTCAACACATGGGGGCATGGAGGTGGGGGCAGAGGTGCGGTAGAGGTGGTGGCCGCGGGGAATTGTAGTTTTGGAGAGAGGTGTAAGTTCCTTCATTCTTGGAGTTTAGGAGATGGATTTTCTTTGTTGACCCAGCTTGAAGGCCATAAGAAGGTTGTAAGTGGAATAGCCTTTCCCTCTGGCTCGAATCAGCTTTATACGGGAAGTACTGATGAGACTGTAAGGGTTTGGGACTGCCAGTCTGGACAGGTAGTCAATCGCGCTGCAGAAGCGGCCGATATTGGAATCATATGTACAGCTGTGATCAATCTTGGCGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGCATACCCAATTTTGTGAAGACCTGGAACACCCAAAACTTAATGGAGCTAAGTCTTAGCGGTCCCGTCGGACAAGTTTATGCTCTTGCTGTGATTAACGATATGCTCTTCACCGGTACGCAGGATGGATCTATATTAGTTTGGAAGTTTAATTTAACTGCCAACTGCTTTGAGCCAGCTGCATCACTTAAAGGTCATTCCCATGGTGTTGTTTCATTAGTTGTCGGGGCTAATAGACTCTACTCTGGTTCAATGGACAACACAATAAGAGTTTGGAACCTTGAAACCCTGCAGTGTTTACAGACACTTTCTGAGCACACTTCTGTGGTGTGGTTAGCCACAGAAAGTGGAAACCTTGAAGTGACATACACTCACCATGAAGAAAAGTTACCCTCTGTGGGATGCATGATTCACAAGGCAAACCCATTTTGGTGTGTTCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATAAATTTGCAGAAAGAGGCAAGATATTCACAAAACAGGAAGTAAGAGCAATTCAGTTAGGGCCTGGTGGCATATTCTTCACTGGTGATGGAACTGGTCAAGTGAAAGTGTGGAATTGGATAGCTGAGCCAACTACTTCTATCCAATAA 1221 0.4627 MDVDGGNKRVFNRLGGTAGGPRNQKVCYHWQAGKCNRHPCQFLHSELPPHNSNGAFSNNPYGSEENLSFNCPPRRTSNFNTWGHGGGGRGAVEVVAAGNCSFGERCKFLHSWSLGDGFSLLTQLEGHKKVVSGIAFPSGSNQLYTGSTDETVRVWDCQSGQVVNRAAEAADIGIICTAVINLGGEVGCMISEGPWVFVGIPNFVKTWNTQNLMELSLSGPVGQVYALAVINDMLFTGTQDGSILVWKFNLTANCFEPAASLKGHSHGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLSEHTSVVWLATESGNLEVTYTHHEEKLPSVGCMIHKANPFWCVLAMIILCASMICHHKFAERGKIFTKQEVRAIQLGPGGIFFTGDGTGQVKVWNWIAEPTTSIQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0802 406 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Lal1g0802 406 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Lal1g0802 406 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Lal1g0802 406 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Lal1g0802 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 156 - -
Lal1g0802 406 PANTHER - 1 308 IPR044715 -
Lal1g0802 406 PANTHER - 308 403 IPR044715 -
Lal1g0802 406 SUPERFAMILY WD40 repeat-like 109 397 IPR036322 GO:0005515
Lal1g0802 406 Gene3D - 203 404 IPR015943 GO:0005515
Lal1g0802 406 Gene3D - 102 202 IPR015943 GO:0005515
Lal1g0802 406 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Lal1g0802 406 Pfam WD domain, G-beta repeat 120 156 IPR001680 GO:0005515
Lal1g0802 406 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Lal1g0802 406 ProSiteProfiles Zinc finger C3H1-type profile. 96 113 IPR000571 GO:0046872
Lal1g0802 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Lal1g0802 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 300 IPR001680 GO:0005515
Lal1g0802 406 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 308 - -
Lal1g0802 406 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 308 403 - -
Lal1g0802 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 165 IPR001680 GO:0005515
Lal1g0802 406 SMART WD40_4 117 156 IPR001680 GO:0005515
Lal1g0802 406 SMART WD40_4 254 291 IPR001680 GO:0005515
Lal1g0802 406 SMART WD40_4 210 247 IPR001680 GO:0005515
Lal1g0802 406 SMART WD40_4 353 396 IPR001680 GO:0005515
Lal1g0802 406 SMART c3hfinal6 88 112 IPR000571 GO:0046872
Lal1g0802 406 SMART c3hfinal6 22 46 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0802 Lal-Chr1 5464984 5470494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0802 114 308 Eukaryotic Initiation Factors Gene Family AT2G46290 25.118 4.39e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal1g0802 WD40 2.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0802 - - lang:109352195 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0802 1 5464984 5470494 Lal1g0802 1 5464984 5470494 ECH
Lal2g0890 2 5850939 5855955 Lal1g0802 1 5464984 5470494 LSH
Lal1g0802 1 5464984 5470494 Lal9g0784 9 5588139 5594105 LSH