Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0798 ATGTTTCCTTTACAACGAGGCAAAGAGGTTGTGATCAAGTTTTCTAATAGTCCCCACCAGCAGCAGAACCAAATCACAGAAGATCTGATTCTGGATGATTATGATTCCCTTGTTGGTGTCAATGATTCTGATAAAATAATCACTACCAACCAGACAAAGAAACTAATTTATGGGTCTGAAAAGAGTAGTACTCATGATGATTCTAATGAACATATGAAGAAGATAGTTCATAGGGATATTGAGAGGCAAAGGAGGCAAGAAATGGCTACTCTTCATGCATCTCTTAGATCTCTTCTCCCACTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGATCACATGAATGAGGCAGTGAATTACATAAAGTACATGCAGGAGAATATCAAAGAACTAGGTGCCAAGAGAGATGAACTGAAGAAACTCTCAACTTCTAAGGTGGAAAACCATGCTACAAACCATGCTTATGGAAGCTTTATTATCCATGAGAACAATGGTATTGTGGGAATTGAAATTACAAGTAGCTCCATAGAGGAAAGATTAACACTTTCAAAGTTGCTGCAGTTACTTGTTGAAGAAAGACTTGAAGTTGTTAATTGCCTTTCAACTGAAGTCAATGGAAGATTGCTACACAGTGTTCAGTGTGAGGTTAACAAGTCCAACAGTGTAGATATGTCTGAGCTAAGAAGGAAAGTTGGTGTTGTATTTCCATCCTATAAATGTTGTGAATAA 729 0.3745 MFPLQRGKEVVIKFSNSPHQQQNQITEDLILDDYDSLVGVNDSDKIITTNQTKKLIYGSEKSSTHDDSNEHMKKIVHRDIERQRRQEMATLHASLRSLLPLEFIKGKRSISDHMNEAVNYIKYMQENIKELGAKRDELKKLSTSKVENHATNHAYGSFIIHENNGIVGIEITSSSIEERLTLSKLLQLLVEERLEVVNCLSTEVNGRLLHSVQCEVNKSNSVDMSELRRKVGVVFPSYKCCE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0798 242 Pfam Helix-loop-helix DNA-binding domain 73 125 IPR011598 GO:0046983
Lal1g0798 242 SMART finulus 78 130 IPR011598 GO:0046983
Lal1g0798 242 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 240 - -
Lal1g0798 242 Gene3D - 63 152 IPR036638 GO:0046983
Lal1g0798 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 138 IPR036638 GO:0046983
Lal1g0798 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 240 IPR015660 GO:0003700|GO:0006357
Lal1g0798 242 CDD bHLH_AtORG2_like 73 143 - -
Lal1g0798 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
Lal1g0798 242 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0798 Lal-Chr1 5429324 5431955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0798 67 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 44.571 1.36e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g0798 HLH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0798 - - gmx:100780888 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0798 1 5429324 5431955 Lal1g0798 1 5429324 5431955 ECH