Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0794 ATGCCTTCTCTCACTCTATCAAACGACTCCGTTTCAACCGAGAACAAACACAAAAAACATAAGAAAAACAAAAACAACGAGAACAACACAGAGAAGTCCCTGAACGACGCCGTTTCAGATACGAAGAAGAAGAAGAGGAAGAAGCATTCATCATCTTCTGGTGATGATGATGAGAAGAATGATAATAGTATTGAAGGTTTGAAATCGAAGGAGAAGAAGAAGAAGAAGAATAAGAAGGCGAAGGTGGAGATGGAAGAGGAAGATATAGAAGAAGAAGAAGAGATTGAGATTGAAGCTGAGAATGTGAATGCGGTTTCTAAGTTTAGAATATCGGAACCGTTGAAGGCGAAATTGAAGGAGAAGGGGATTGAAGCATTGTTCCCTATTCAAGCCATGACCTTCGATATCATCCTTCATGGTTCCGATTTGGTTGGTCGTGCTCGCACTGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTAACAAATGGACCGGCAAAAGCATCGAGAAAGATGGGCTATGGGAGGTCTCCGAGTGTCATTGTGCTTCTACCTACTAGGGAGTTGGCCAAACAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGGTTTCTTGCTGTTTATATGGTGGGGCTCCATATCAGACTCAAGAGATTAAGCTCAAGAGGGGTGTTGATGTTGTTATTGGCACACCTGGCCGCATAAAGGATCATATAGAGAGGGGAAATATTGACCTGAGCCTACTAAGGTTCCGTGTTCTTGACGAGGCTGATGAGATGCTGAGGATGGGTTTCGTTGAAGATGTTGAACTCATTCTAGGTAAGGTAGATGATGTTAACAAAGTTCAGACACTTCTTTTCAGTGCTACTTTACCAGACTGGGTTAAACAGATTTCTACAAGATTTTTGAAACGTGATAAGGAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCAACAATGTTAGGCATATTGTTCTACCATGTAATAGTTCTGCTAGGTCCCAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGAACAATTATTTTTACTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCAGGGGTCTTACCTGGAGCAAAACCTCTCCATGGTGACATCCAACAGTCACAACGTGAGGTTACACTGGCAGGTTTTAGGTCTGGAAAGTTCATGACATTGGTGGCCACAAATGTGGCAGCTAGGGGTCTGGATATCAATGATGTTCAGTTAATTATCCAGTGTGAGCCTCCACGTGATGTAGAAGCATATATCCATCGTTCTGGACGTACAGGAAGAGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAAGTCAAGTGTGTCTAGAATAGAAAGAGAATCGGGTGTGAAATTTGAACACATATCTGCTCCTCAGCCTGATGATATTGCCAAAGCTGTTGGCGGGGAAGCTGCTGAAATGATTTTGCAAGTGTCTGATAGTGTGGTTCCTGCATTCAAGCGTACTGCTGAGGGGCTTTTGAATAACAGTGGTTTATCGGCTGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGAGATAAAGAAACGATCGCTTCTGACTTCCATGGAGAATTATGTTACATTACGTCTTGAGATTGGAAAACCCATCTTCACTCCATCGTTTGCATTTGGAGTCTTGAGGAGATTCGTGCCGGAGGAGACTGTTAACACAGTGCAGGGTCTTACTATCACTGCAGATGGAAATGCTGCTGTTTTTGATGTACCTGCCAAAGACTTAGATGCATTTATTACTGGTCAGCAAAATGCTGCTAATGTAAGTCTGGAGGTGGTAAAAGCATTGCCGCGTTTGCAAGAAAGAGACCAATCGAAGGTGGGTAGATATGGCGGTGGCGGCGGCGGTGGTGGTGGTGGTCGAGGGTTTAATGACAGAAGTGGTGGAAATAGGTTTGGTGGAAGAGGAGGTGGGAGGAATGGTAGGTTTTCAAATGGTTTTGGTGGTGGGAGAGGTGGGAACAGAGGAGGAAGGAGATGGTAA 2079 0.4392 MPSLTLSNDSVSTENKHKKHKKNKNNENNTEKSLNDAVSDTKKKKRKKHSSSSGDDDEKNDNSIEGLKSKEKKKKKNKKAKVEMEEEDIEEEEEIEIEAENVNAVSKFRISEPLKAKLKEKGIEALFPIQAMTFDIILHGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKMGYGRSPSVIVLLPTRELAKQVHADFEVYGGAMGLVSCCLYGGAPYQTQEIKLKRGVDVVIGTPGRIKDHIERGNIDLSLLRFRVLDEADEMLRMGFVEDVELILGKVDDVNKVQTLLFSATLPDWVKQISTRFLKRDKETADLVGNEKMKASNNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGVLPGAKPLHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSRIERESGVKFEHISAPQPDDIAKAVGGEAAEMILQVSDSVVPAFKRTAEGLLNNSGLSAVELLAKALAKAVGFTEIKKRSLLTSMENYVTLRLEIGKPIFTPSFAFGVLRRFVPEETVNTVQGLTITADGNAAVFDVPAKDLDAFITGQQNAANVSLEVVKALPRLQERDQSKVGRYGGGGGGGGGGRGFNDRSGGNRFGGRGGGRNGRFSNGFGGGRGGNRGGRRW 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0794 692 Pfam DEAD/DEAH box helicase 127 304 IPR011545 GO:0003676|GO:0005524
Lal1g0794 692 SMART helicmild6 371 448 IPR001650 -
Lal1g0794 692 Gene3D - 51 316 IPR027417 -
Lal1g0794 692 MobiDBLite consensus disorder prediction 50 70 - -
Lal1g0794 692 Gene3D - 326 553 IPR027417 -
Lal1g0794 692 CDD GUCT_RH7_like 544 629 - -
Lal1g0794 692 Gene3D - 554 627 - -
Lal1g0794 692 CDD SF2_C_DEAD 331 457 - -
Lal1g0794 692 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 671 - -
Lal1g0794 692 Coils Coil 67 102 - -
Lal1g0794 692 SUPERFAMILY RNA-binding domain, RBD 541 624 IPR035979 GO:0003676
Lal1g0794 692 CDD DEADc 114 312 - -
Lal1g0794 692 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 260 268 IPR000629 -
Lal1g0794 692 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 487 IPR001650 -
Lal1g0794 692 Pfam Helicase conserved C-terminal domain 350 448 IPR001650 -
Lal1g0794 692 MobiDBLite consensus disorder prediction 1 86 - -
Lal1g0794 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 461 IPR027417 -
Lal1g0794 692 MobiDBLite consensus disorder prediction 637 692 - -
Lal1g0794 692 Pfam GUCT (NUC152) domain 537 632 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lal1g0794 692 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 36 671 - -
Lal1g0794 692 SMART ultradead3 122 334 IPR014001 -
Lal1g0794 692 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 316 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0794 Lal-Chr1 5403898 5409263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0794 140 454 Eukaryotic Initiation Factors Gene Family AT1G72730 30.094 1.01e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0794 K16911 - gmx:100820207 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0794 1 5403898 5409263 Lal1g0794 1 5403898 5409263 ECH