Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0776 ATGCCTGTCATGAAAAAGAATTCTGAGCAGACTTGTATTGGATCTGCATTTGAGAAGTTGGCGAAGCAACTTAGGGAACCTGTTCAATTTGAATTGCCAGAGTGGTTCACTAAGTCGAAGCCAATGCAGTATACCTTTATAAAGCGTAATATATATCTCACGAAGAAGTTCAAGAGACGGTTTGAAGATGATGGGATATTCTGTTCCTGCACTCCTTCACCTGAATCTCCTGGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCAGTCTAGCTGTTCTTCAGGCTGTAAATGTGGGAGCTCCTGTCTGAACAAATCATTTCAGCATCGTCCTGTGAAAAAGATGAAATTGATTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCCGATGAGGATATCAAGCTAGGGGACTTTGTTATAGAATATGTTGGAGAAGTCATCGATGACAAAACATGTGAAGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAACTTTTACTTGTGTGAAATCAATCGAGATATGGTGATTGATGCAACATATAAAGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCTACTCGTGACATACAAAAGGGCGAGCATTTGACTTATGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGCCATTGTGGTGCTGCTGGATGTAGGCGTAAGCTTGGCGTCAAACCTGGCAAGCCTAAAATGTCTTCAGATACTGCATTAAAATTAGTTGCATATCAGGTTTATGGGAACAGATGTTTGCAAATTGGAAGTTCTCATGTTGTTGACGAATCAAGGTGCTTACGCAATTGCATTGGTGAAGTTATTAGGTTAAAACACCTTGAAAATGTGAGGTTTGGGATTATTAAACGGTTTGATAAATATTCCCAAAAACACTCGATCATGTTTGAAGATGGTTGTGTTGAAATTTATGACTTGTCAAAAGAAGACTGGGAATTAGTGAGATTGTGA 1050 0.3924 MPVMKKNSEQTCIGSAFEKLAKQLREPVQFELPEWFTKSKPMQYTFIKRNIYLTKKFKRRFEDDGIFCSCTPSPESPGVCGRDCHCGMLQSSCSSGCKCGSSCLNKSFQHRPVKKMKLIQTEKCGSGIVADEDIKLGDFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAGCRRKLGVKPGKPKMSSDTALKLVAYQVYGNRCLQIGSSHVVDESRCLRNCIGEVIRLKHLENVRFGIIKRFDKYSQKHSIMFEDGCVEIYDLSKEDWELVRL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0776 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 11 346 - -
Lal1g0776 349 SMART set_7 114 237 IPR001214 GO:0005515
Lal1g0776 349 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0018024
Lal1g0776 349 PANTHER SET DOMAIN PROTEINS 11 346 - -
Lal1g0776 349 SMART PostSET_3 237 253 IPR003616 -
Lal1g0776 349 ProSiteProfiles SET domain profile. 114 231 IPR001214 GO:0005515
Lal1g0776 349 ProSiteProfiles Post-SET domain profile. 237 253 IPR003616 -
Lal1g0776 349 SUPERFAMILY SET domain 27 243 IPR046341 -
Lal1g0776 349 Pfam SET domain 125 230 IPR001214 GO:0005515
Lal1g0776 349 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 38 291 IPR025787 -
Lal1g0776 349 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0018024
Lal1g0776 349 Gene3D SET domain 18 269 IPR046341 -
Lal1g0776 349 CDD SET_ASHR3-like 115 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0776 Lal-Chr1 5269752 5277912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0776 93 249 C2H2 Transcription Factor Family AT2G23740 35.028 1.68e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal1g0776 SET 5.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0776 - - gmx:100808183 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0776 1 5269752 5277912 Lal9g0755 9 5271625 5281139 LSH