Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0774 ATGGATAAGGAAGGTGATGTGAACAACCATGGTGATGAAGTGCAAGACATAGAAAATAACGGTTTGTTGGATGGGAAAGACGAGATTGGGACGCACTGGTCCGAGTTTTCGGATAGAAACATGCCATATGCGCAACCGCTTCTTGCAAAGAGGACTAACATCACATCCCAGATTGCTATAGTTGGTGCCAACCTCTGCCCTATTGAAAGTCTTGACTATGAGATTTTCGAGAATGAACTATTTAAGCAGGACTGGAGGTCCAGGAAGAAGGTTCAGATAGTGCAATATGTGATACTTAAGTGGGGATTTGCTCTCCTTATTGGATTAGGTACTGGAGCGGTTGGATTCTTCAATAGTTTTGCAGTTGAAAACATAGCTGGTTCCAAGCTGCTAATGACGGCTAGTCTCATGACAAAAAACAAATATTACCAGGCTTTTTTGCTATATGCTGGAATCAATATGGGTTTAGCAGCAGCAGCAGCAGCACTTTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCAGAGGTAAAAGCATATCTCAACGGTGTGGATGCTCACTCTATACTGGCTCCTAGCACTCTTTTTGTGAAGATTTTTGGTTCTGTCCTTGGAGTTTCTGCTGGATTTGTGGTGGGAAAAGAAGGACCTATGGTACACACGGGTGCATGCATAGCTTCTTTACTGGGGCAGGGCGGATCCCGCAAGTATGGCTTGACTTGGAAAGGCCTCAGGTATTTCAAGAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCCAGTGCTTTTCGGGCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTATCTATTTCTTCTAAAATCATTCACTCTTCTTCAACTTCATGGTGTCCTGATTGACAAAATAAAGGATGTAGTTAGTGCTAAAAGTATGGGGAAGCTTACTTTTTGTTTTGATGTGTTGATGTGGCGGAGTGCTCTTCTCTGGAGGACATTTTTCACGACAGCAGTTGTTGCTATTGTTTTAAGAGCTGGAATTCAGTTTTGCGGCACAGGGAAATGTGGGCTATTTGGGAAAGGTGGTCTGATATTGTATGATGTCAGTGCATTCAAGGTATCATATAGTGGTGCTGATCTAGTAGCAGTATTAATCCTGGGAATCGTTGGAGGCATTCTAGGAAGCTTGTACAATTATCTCGTGGATAAGGTTGTCCGCACATACAGCATCATTAACGGAAAAGGTGCAGCTTTCAAAATCTTACTCGTAATCACAATTTCTCTTTTGACATCATGTTGTTATTATTTCCTACCATGGGTTGCTCCTTGTACCCCCTGTCCTACTAATATTACAACAACATGTCCCTCTGTTGATGAGTCTGGAGAATTCAAAAGATTCCAATGTCCACCAGGCTACTACAATGCTCTTGCTTCCCTTTTTATAAACACCAATGATGACGCTATTCGTATTCTATTAACCTCCGGTGGGTTTCATGTGTTCAGTCTGTTTATCTTCTTTCTTGTTGTTTACTTTATGGGGGTAATCACTTATGGCATTGCTATCCCATCTGGCCTTTTCATTCCCGTGATACTTGCCGGGGCTTCCTATGGTCGTCTTGTTGGGAGTATCTTTGATCCTGTTATGACGCTTGACCCCGGATTCTTTGCCCTTCTTGGAGCTGCATCCTTCCTTGGTGGCACCATGAGAATGACAGTGTCCCTTGGTGTTATATTACTTGAGCTCACTAATGATCTCTTGTTACTTCCACTCGTGATGTTGACCTTATTAGTCTCGAAAACTGTGGCTGATAGCTTCAACAAGGGTGTTTATGAGCAAATACTACATATCAAAGGACTTCCTTATTTGGAGGCCCATGCAGAACCTTACATGAGGAATTTAGTTGCACTTGATGTCGTCACGGGTCCACTAATCACCTTTTCTGGCATTGAAAAGGTCGGGAATATAATACATATTTTGGAGAGTACAAACCATAACGGTTTTCCTGTCATCGATGAACCACCTTTCTCAGAGACACCAGAGTTATGTGGGATTGTACTGAGGTCTCATTTGCTAGTATTACTGAAGGGAAAGAACTTCTCTAGAGAACGGGTGCTCGCGAATCAAAGCATCTTCAAGAAGATTTCCACATTCGATTTTGCTAAGGCGGGATTAGGGAAAGGAATCAAACTAGAGGATTTAGATATCGAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCTATAACTAATGCTTCCCCATACACAGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACTTGGACTAAGGCACATGTGTGTTGTCCCAAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTGACGCGCCATGATTTTATGCCAGAGCATGTTTTGGGACTTTACCCTCATATGAAGTCTCAGAAATGGGACTGA 2472 0.4345 MDKEGDVNNHGDEVQDIENNGLLDGKDEIGTHWSEFSDRNMPYAQPLLAKRTNITSQIAIVGANLCPIESLDYEIFENELFKQDWRSRKKVQIVQYVILKWGFALLIGLGTGAVGFFNSFAVENIAGSKLLMTASLMTKNKYYQAFLLYAGINMGLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKIFGSVLGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYGLTWKGLRYFKNDRDRRDMITCGAAAGVASAFRAPVGGVLFALEEAASWYLFLLKSFTLLQLHGVLIDKIKDVVSAKSMGKLTFCFDVLMWRSALLWRTFFTTAVVAIVLRAGIQFCGTGKCGLFGKGGLILYDVSAFKVSYSGADLVAVLILGIVGGILGSLYNYLVDKVVRTYSIINGKGAAFKILLVITISLLTSCCYYFLPWVAPCTPCPTNITTTCPSVDESGEFKRFQCPPGYYNALASLFINTNDDAIRILLTSGGFHVFSLFIFFLVVYFMGVITYGIAIPSGLFIPVILAGASYGRLVGSIFDPVMTLDPGFFALLGAASFLGGTMRMTVSLGVILLELTNDLLLLPLVMLTLLVSKTVADSFNKGVYEQILHIKGLPYLEAHAEPYMRNLVALDVVTGPLITFSGIEKVGNIIHILESTNHNGFPVIDEPPFSETPELCGIVLRSHLLVLLKGKNFSRERVLANQSIFKKISTFDFAKAGLGKGIKLEDLDIEEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPHMKSQKWD 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0774 823 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 34 292 - -
Lal1g0774 823 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 328 820 - -
Lal1g0774 823 PRINTS Plant CLC chloride channel signature 74 82 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lal1g0774 823 PRINTS Plant CLC chloride channel signature 482 498 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lal1g0774 823 MobiDBLite consensus disorder prediction 1 23 - -
Lal1g0774 823 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 328 820 - -
Lal1g0774 823 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 34 292 - -
Lal1g0774 823 SUPERFAMILY CBS-domain pair 632 806 IPR046342 -
Lal1g0774 823 CDD CBS_pair_voltage-gated_CLC_euk_bac 631 808 - -
Lal1g0774 823 SUPERFAMILY Clc chloride channel 78 293 IPR014743 -
Lal1g0774 823 Gene3D Clc chloride channel 91 627 - -
Lal1g0774 823 Gene3D - 628 812 IPR046342 -
Lal1g0774 823 ProSiteProfiles CBS domain profile. 755 819 IPR000644 -
Lal1g0774 823 Pfam Voltage gated chloride channel 330 609 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal1g0774 823 Pfam Voltage gated chloride channel 157 288 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal1g0774 823 PRINTS Chloride channel signature 169 186 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal1g0774 823 PRINTS Chloride channel signature 200 219 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal1g0774 823 PRINTS Chloride channel signature 264 283 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal1g0774 823 PRINTS Chloride channel signature 559 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal1g0774 823 PRINTS Chloride channel signature 577 596 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal1g0774 823 PRINTS Chloride channel signature 615 629 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal1g0774 823 SUPERFAMILY Clc chloride channel 329 631 IPR014743 -
Lal1g0774 823 Pfam CBS domain 643 701 IPR000644 -
Lal1g0774 823 Pfam CBS domain 759 805 IPR000644 -
Lal1g0774 823 SMART cbs_1 759 810 IPR000644 -
Lal1g0774 823 SMART cbs_1 648 701 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0774 Lal-Chr1 5247061 5253310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0774 1 821 Ion Channels AT5G49890 67.070 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0774 K05016 - gmx:100809070 1142.1