Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0641 ATGAAGTATGTGCTGGTGACAGGTGGTGTTGTCAGTGGACTTGGAAAAGGAGTCACTGCAAGCAGTGTTGGGGTACTCCTCAAGGCCTGTGGATTTCGAGTTACTTCAATCAAGATCGATCCCTACCTCAACACTGATGCAGGTACAATGTCTCCTTTTGAGCATGGGGAGGTGTTTGTTCTAGATGATGGTGGTGAGGTTGATCTCGATCTTGGAAACTATGAACGCTTCTTGGACATCAAATTAACCCGTGACAATAATATCACAACTGGAAAAATATATCAGTCTGTCATTGAGAAGGAGAGAAGAGGAGATTATCTTGGAAAGACTGTCCAGGTTGTTCCACACATTACAGATGCCATCCAAGGTTGGATAGAGCGTGTGGCACAGATACCAGTTGATGGAAAAGATGGCCCGGCTGATGTTTGTGTCATTGAATTGGGTGGAACTATAGGGGACATTGAGTCTATGCCTTTTATTGAAGCACTTGGCCAATTTTCATATCGTGTAGGCTCTGGCAACTTCTGTTTGATTCATGTCAGTCTGGTGCCTGTTCTCAGTGTTGTTGGTGAACCGAAAACAAAGCCAACTCAACACAGTGTTCGTCAGCTTAGAGCGTTAGGGATGACCCCAGATCTTCTTGCTTGTCGCAGTTCAAAGGAACTTGATGACAATGTTAAGGGAAAACTAGCTCAATTTTGTCATGTGCCGGACCAGAAGGCGCACAAGGCAATCCTGAAAGCATTAAACCTGCTAGGTGTTGCTACAGAGCCTAACTTCAAGGAGTGGATCAGTAGGACAAAAGTCCATGATAAATTTCATGAATCTGTTAGGATTGCAATGGTGGGAAAATATACTGGCCTTTCAGATGCATATCTTTCTGTGCTGAAGGCACTTTTACATGCTTCTGTTTCTCACAACCATAAACTTATTGTGGACTGGGTTCCAGCTGAGGATCTTGAAGTTGACACTTTTAAGGAGAATCCTGATGCACATGAAGTTGCTTGGGGTCTTTTGAAGGGAGCTAATGGGATTCTAGTTCCAGGAGGTTTTGGTGACAGAGGAGTGCAAGGGAAAATTCTTGCTGCTAAGTATGCCCGAGAGAACAAGGTTCCCTTTCTGGGCATTTGCTTGGGAATGCAAATTGCTGTCATTGAGTTTGCAAGATCTATTCTAGGTCTTCTTGATGCTAATAGCACAGAGTTTGATCCTGAAGCCAAAACCCCTTGTGTCATATTTATGCCTGAAGGTTCGAAGACTCATATGGGCGGAACTATGCGTCTTGGTTCAAGGAGAACTTACTTCCAAGTTGCTGACTGCAAATCAGCCAAGCTGTATGGTAATGTGAGCTTTGTTGATGAGAGACATCGGCATAGATATGAGGTTAATCCTGACTTGATATCAAAACTTGAGAGTGCTGGCCTATCTTTCGTGGGCAAAGATGAAACTGGGAGGCGCATGGAGATAGTTGAATTGCCCGGTCATCCTTTCTTCGTTGGTGCTCAGTTTCATCCTGAGTTTAAATCAAGACCAGGGAAACCTTCTCCACTATTCTCAGGATTAATTGCAGCAGCATGCAAAACGACTCGGACAGTTCTGCCAACAAGCAACGGCCACACCAAGTTAACTAATGGTGTAGTTGAAGATGCCATGGGAAACTCAAATGGTAGAAAGCGTGATGCTGAATCTTCAAGAAATGTTAAAGACCAAACATCCTCTTCCTCTTCCTCCTTTCTTCCAACAAAGAAGAAGTATGCTTTCATTCCTGATAACTTCACCACCCTTCAACAGGTTACTACTGCCTTGAGGGAAGAAGGTTTAGAATCATCAAATCTGATACTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGCAGAATCTCATTCCAGAATAAAAGCCTGCATGCTATTGGAAACACACCTAACCCCTATGAGAAGGCCATCTCTATTATTGGCAAGACTATAGCTCCCTTTGATGATGACAACTTGATTCCTTGTTTTGGTTTTGGTGATGCTACTACTCATGATCATGAAGTGTTTAGCTTTCACAGTGACCATTCACCTTGTCATGGTTTTGAGGAAGTTCTGGATTGCTATCAAAAAATAGTTCCAAACTTGAGTCTATCAGCATGGAATGGGACAACCCGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCCGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGTGCCGGGGGAGCATAGCATAGGGCCAACTTCTTATGCTCCGGTGATAGAGGCTGCAATAGATATAGTTGAGAAAGCTGGTGGCCAATTCCATGTGTTGGTTATTGTTGCAGACGGTCAGGTTACAAGAAGTATCAACACTGATGATGGAGAACTTAGTCCTCAAGAAAAGAGGACAATCAAAGCAATTGTTGATGCAAGCTCATATGCGCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAGAAGTTTGATGACAAGATACCAGCACGTGATTTTGACAATTTTCAGTTTGTTAACTTCTCCGACATAATGTCTAAGAATTCAAGCTCCTCTGAGAAAGAAACGGCTTTTGCCCTGGCTGCTCTAATGGAGATACCTTTCCAATATAAGGCAGCCATTGAATTTGGATTACTTGGTCATGCAACAGGAAGAGCAAAGAAAATAGTTCCAAGACCTCCTCCAGTTCCTTATTCTCGCCTCGTGCCTCCAGCTCATATTCCCAGCTATATGCCAGCATCAACAGAAGATGAGCAAAACCAAATGGTGTGCGCTATTTGTCTGACCAATGCAAAGGATTTGGCCTTTGGATGTGGTCACATGGCTTGCAGAGATTGTGGAGCCAAGTTAAGCAATTGCCACATATGCCGAGAGAGGATCACCAATCGTCTTAGGGTGTTCACTGGAACTTCCCAACACCTTCACCAGATCCAATCCCAGATAACTACCCATGGATTCAGCAACAACGATTACATCACACCCAACATCATCACCACGTGTTCACGCCTTAATAAGATTGTACATGCCCGGAAACTGTTTGATAAAATTCCTGACCCAAATACAGCCACATGGAACTCCATGTTCAGAGGGTATTTACAACTTGATTGTTACTTGGAAGTTGTTCTTTTGTTCCGCAAGATGACCCGCTTTGGCGTTGTGCCGAATTGCTTCACCTTCCCTATGGTTGTTAAGTGTTGTGGGGAGGCGAATGCAGTTAGAGAAGGAGAAGAGGTTCATTGTGTTGTGGTGAGAACGGGTTTTATGTCAAACCCGTTTGTGGGGACTGCGTTGATTGATATGTATTCATTGTGGGGATCCGTTGGGGATGCTTATAAGGTGTTTGGGGAAATGCATGAGAGGAATGTGGTTGCTTGGACTGCCATCGTTCGTGCCTACATTTCCGTCTGTGACATGGTTTCTGCACAATGCCTTTTTGATCTGGCGCCTGTGCGTGATGTCATCCTGTGGAACACTTTAGTTTCGGGTTATATTGAAACTGGGGATATGGTTGTAGCTCGGAAACTTTTTGATAAAATGCCGGGCCGGGATGTGATGTCGTGGAACACCATGTTGAACGGTTATGCAAGTAACAGGGATATTGAGTTGTTTGAGAAGATTTTTGACGAGATCCCTCAAAGGAATGTCTTTTCTTGGAATGGATTAATTGGAGGCTATGCGCGTAATGGCCTTTTTTCTCAAGTTTTGGAGTCTTTTAATCGGATGTTGGTTGAAGGAGATGTTCTTCCTAATGATGCCACACTTGTCACAGTGCTGTCTGCATGTTCAAAATTAGGGTCCCTTGATATGGGTAAGTGGGTGCATGTATATGCGGAGAATATTGGGTATAAAGGAAACCTGTTTATCGGAAATGCTTTGATTGATTTGTATGCAAAATGTGGGGTGATAGAAAATGCAGTAGATGTGTTCAATTCAATGGATAGGAAAGATATATTTACCTGGAACACTATCATTAATTGTCTGGCCATGCATGGGCATGCAGCTGATGCCTTAAGTTTATTTGATGATATGAAGAATGCGGGAGTTAAGCCAGACGAAGTTACTTTTGTTGGGATTTTGTCTGCATGTGTGCATATGGGGTTAGTCAAGGATGGATTTTCTTACTTCCAATCTATGACTGATCATTATTCAATTGTGCCTCAAATCCAGCATTATGGGTGTATGGTTGATTTGCTAGGAAGAGCTGGTCTTTTAGACCAGGCTGTTAATTTTGTGAGAAAGATGCCAATGGAACCAGATGCAATCATATGGGCCGCTCTACTCGGGGCATGTAGGATATACAAGAATGTAGAAATAGCGGAACTGTCTCTCCAACGGCTCATCGAACTTGAACCAAAAAACCCGGCCAATTTTGTCATGCTGTCAAACATATATAAGGATCTTGGAAGATGGCAAGATGTTGCCCGGTTGAAGACTGCAATGAGAGATACTGGGTTCCGGAAGTTGCCAGGATGTAGTGTCGTTGAGGTCAATGATAGTGTGGTAGAATTCTATTCTTTGGATGAGAGACATCCTGAAACAGAGAACATATATAGGGCATTGCGGGGATTAACTATTCTGTTAAGATCATATGGCTACATTCCAAATCTTGTGGATATTGTTCAAGGAACCTAA 4659 0.4355 MKYVLVTGGVVSGLGKGVTASSVGVLLKACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQGWIERVAQIPVDGKDGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGSGNFCLIHVSLVPVLSVVGEPKTKPTQHSVRQLRALGMTPDLLACRSSKELDDNVKGKLAQFCHVPDQKAHKAILKALNLLGVATEPNFKEWISRTKVHDKFHESVRIAMVGKYTGLSDAYLSVLKALLHASVSHNHKLIVDWVPAEDLEVDTFKENPDAHEVAWGLLKGANGILVPGGFGDRGVQGKILAAKYARENKVPFLGICLGMQIAVIEFARSILGLLDANSTEFDPEAKTPCVIFMPEGSKTHMGGTMRLGSRRTYFQVADCKSAKLYGNVSFVDERHRHRYEVNPDLISKLESAGLSFVGKDETGRRMEIVELPGHPFFVGAQFHPEFKSRPGKPSPLFSGLIAAACKTTRTVLPTSNGHTKLTNGVVEDAMGNSNGRKRDAESSRNVKDQTSSSSSSFLPTKKKYAFIPDNFTTLQQVTTALREEGLESSNLILGIDFTKSNEWTGRISFQNKSLHAIGNTPNPYEKAISIIGKTIAPFDDDNLIPCFGFGDATTHDHEVFSFHSDHSPCHGFEEVLDCYQKIVPNLSLSAWNGTTRPYSQRGGWHYWQRPSGENAAGAKRGRPVPGEHSIGPTSYAPVIEAAIDIVEKAGGQFHVLVIVADGQVTRSINTDDGELSPQEKRTIKAIVDASSYALSIILVGVGDGPWEDMKKFDDKIPARDFDNFQFVNFSDIMSKNSSSSEKETAFALAALMEIPFQYKAAIEFGLLGHATGRAKKIVPRPPPVPYSRLVPPAHIPSYMPASTEDEQNQMVCAICLTNAKDLAFGCGHMACRDCGAKLSNCHICRERITNRLRVFTGTSQHLHQIQSQITTHGFSNNDYITPNIITTCSRLNKIVHARKLFDKIPDPNTATWNSMFRGYLQLDCYLEVVLLFRKMTRFGVVPNCFTFPMVVKCCGEANAVREGEEVHCVVVRTGFMSNPFVGTALIDMYSLWGSVGDAYKVFGEMHERNVVAWTAIVRAYISVCDMVSAQCLFDLAPVRDVILWNTLVSGYIETGDMVVARKLFDKMPGRDVMSWNTMLNGYASNRDIELFEKIFDEIPQRNVFSWNGLIGGYARNGLFSQVLESFNRMLVEGDVLPNDATLVTVLSACSKLGSLDMGKWVHVYAENIGYKGNLFIGNALIDLYAKCGVIENAVDVFNSMDRKDIFTWNTIINCLAMHGHAADALSLFDDMKNAGVKPDEVTFVGILSACVHMGLVKDGFSYFQSMTDHYSIVPQIQHYGCMVDLLGRAGLLDQAVNFVRKMPMEPDAIIWAALLGACRIYKNVEIAELSLQRLIELEPKNPANFVMLSNIYKDLGRWQDVARLKTAMRDTGFRKLPGCSVVEVNDSVVEFYSLDERHPETENIYRALRGLTILLRSYGYIPNLVDIVQGT 1552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0641 1552 Pfam Copine 634 711 IPR010734 -
Lal1g0641 1552 Pfam Copine 750 888 IPR010734 -
Lal1g0641 1552 SMART VWA_4 609 853 IPR002035 -
Lal1g0641 1552 TIGRFAM PPR: pentatricopeptide repeat domain 1327 1361 IPR002885 -
Lal1g0641 1552 TIGRFAM PPR: pentatricopeptide repeat domain 1195 1222 IPR002885 -
Lal1g0641 1552 TIGRFAM PPR: pentatricopeptide repeat domain 1032 1065 IPR002885 -
Lal1g0641 1552 TIGRFAM PPR: pentatricopeptide repeat domain 1225 1259 IPR002885 -
Lal1g0641 1552 TIGRFAM PPR: pentatricopeptide repeat domain 1299 1326 IPR002885 -
Lal1g0641 1552 TIGRFAM PPR: pentatricopeptide repeat domain 1104 1132 IPR002885 -
Lal1g0641 1552 TIGRFAM PPR: pentatricopeptide repeat domain 1164 1191 IPR002885 -
Lal1g0641 1552 Gene3D - 273 537 IPR029062 -
Lal1g0641 1552 MobiDBLite consensus disorder prediction 535 550 - -
Lal1g0641 1552 Gene3D - 1 254 IPR027417 -
Lal1g0641 1552 CDD CTPS_N 2 237 IPR017456 GO:0003883|GO:0006221
Lal1g0641 1552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1029 1063 IPR002885 -
Lal1g0641 1552 Gene3D Tetratricopeptide repeat domain 978 1128 IPR011990 GO:0005515
Lal1g0641 1552 Gene3D Tetratricopeptide repeat domain 1287 1394 IPR011990 GO:0005515
Lal1g0641 1552 Gene3D Tetratricopeptide repeat domain 1192 1286 IPR011990 GO:0005515
Lal1g0641 1552 Gene3D Tetratricopeptide repeat domain 1129 1191 IPR011990 GO:0005515
Lal1g0641 1552 PANTHER CTP SYNTHASE 238 553 IPR004468 GO:0003883|GO:0006221
Lal1g0641 1552 PANTHER CTP SYNTHASE 1 237 IPR004468 GO:0003883|GO:0006221
Lal1g0641 1552 SUPERFAMILY Class I glutamine amidotransferase-like 276 528 IPR029062 -
Lal1g0641 1552 Pfam PPR repeat 1400 1424 IPR002885 -
Lal1g0641 1552 Pfam PPR repeat 1195 1224 IPR002885 -
Lal1g0641 1552 Pfam PPR repeat 1104 1131 IPR002885 -
Lal1g0641 1552 Pfam PPR repeat 1225 1254 IPR002885 -
Lal1g0641 1552 Pfam PPR repeat 1164 1192 IPR002885 -
Lal1g0641 1552 Pfam Zinc finger, C3HC4 type (RING finger) 930 970 - -
Lal1g0641 1552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 240 IPR027417 -
Lal1g0641 1552 SUPERFAMILY TPR-like 1310 1481 IPR011990 GO:0005515
Lal1g0641 1552 SUPERFAMILY RING/U-box 924 987 - -
Lal1g0641 1552 CDD GATase1_CTP_Synthase 277 522 IPR033828 GO:0003883|GO:0006241
Lal1g0641 1552 ProSiteProfiles Zinc finger RING-type profile. 933 966 IPR001841 -
Lal1g0641 1552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1223 1257 IPR002885 -
Lal1g0641 1552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1161 1195 IPR002885 -
Lal1g0641 1552 Pfam CTP synthase N-terminus 2 240 IPR017456 GO:0003883|GO:0006221
Lal1g0641 1552 PANTHER CTP SYNTHASE 238 553 - -
Lal1g0641 1552 PANTHER CTP SYNTHASE 1 237 - -
Lal1g0641 1552 Pfam E motif 1442 1504 IPR046848 -
Lal1g0641 1552 Pfam PPR repeat family 1028 1075 IPR002885 -
Lal1g0641 1552 Pfam PPR repeat family 1324 1372 IPR002885 -
Lal1g0641 1552 Pfam Glutamine amidotransferase class-I 288 523 IPR017926 -
Lal1g0641 1552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 920 977 IPR013083 -
Lal1g0641 1552 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 278 531 - -
Lal1g0641 1552 MobiDBLite consensus disorder prediction 535 578 - -
Lal1g0641 1552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1325 1359 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0641 Lal-Chr1 4164111 4178417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0641 1013 1544 Glycoside Hydrolase AT3G49170 33.028 2.94e-99 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0641 K01937 - lang:109325877 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0641 1 4164111 4178417 Lal11g1565 11 18690780 18703917 PCT
Lal1g0641 1 4164111 4178417 Lal1g1535 1 17529505 17536617 PCT