Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0616 GGAATTTCACGCAAGTTTAAAAGCAACTGTTTGCTGTTCCAAACAACCTCTGTCTCTCTCTCACCTTCCTACTCAAACTACCACTTTCCTTTTCTGATCATTCATCGTTCCAGAGCCCTATTTTCTTCTGTCCTTATCTGTCATTTTTCTCTTCCTATTCTATTAATTGTAATCAGTTTTTTCCTTTATACCCATTCTTTCCATAACTACCCATTCTCTTTTATCTGCCTAACCACACATTTTTATAATAACCCATTTTCCTTCTTTGTGTTGATCTTTCTGAATAGGAAATTATGTTCAATTAAACTTTTTTTTAATTACTTTTTCCTTTCCTTTTCCGTCATTAAAAAACATATTTTTTGGGTGTGTTTAGATACCGTGGATTGTGTTGGGTTTTTTTCACTTTTATTTTTCATTGTGGGGTGGTGCTTTATTGAATTTGATTCCATGGCTGCAGTTGCTGAGAATTCTGTTGATGCAGTAGTTCCTGCTCCAACCAAATTGGACTCTAAACCAAAGCCTCATGATTCTGAATTCAATGTGCAAAATTTAGTTGACATGTTCAAAAAGCTGAATCCTTTGGCTGAGGAGTTTTTTCCTTCATCTTATTCTCAATATGATCATGCTTATCAGAGCTATAACCAATTCCAACCCAACAATTTTGTGGCCACCAACATGCCCTTAGTTAATGGTCATAACCCAAACAATGGAAGGAGAAGTGGTAATTTTATCCATGGTCGTGGAGGGAGAAGGGTGAGTGCTGCTAGATTACCTAAGCCTCAGAGGGAAGATAGCGTTAGAAGGACAGTATATGTTTCCGAAGTTGATCAAGATGTAACTGAGGAGAGGCTTGCTGCCTTGTTTAGTACTTGTGGACAAGTGATTGATTGCCGAATTTGTGGCGATCCTCATTCAGTTCTTCGCTTTGCATTTGTAGAGTTCACTGATGAGTATGGTGCAAGGGCAGCCTTAAGCCTTGATGGTACTGTGCTTGGATCCTTTCCAGTCAAGGTCCTTCCCTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGGTGATGAACGTGAAATGTGTACAAGGACTGTCTACTGCACAAACATTGATAAGAAGGTTTCTCATGCTGAAGTCAAGCAGTTTTTTGAATCATCTTGTGGGGAGGTCACTCGCTTGAGGCTTTTAGGAGATCATCAGCATTTAAGTCGGATTGCTTTTGTGGAGTTTGCAATGGCTGAAAGTGCCATTCTTGCTCTTGGTTGCAGTGGGATGTTTTTGGGAATCCAGCCAGTCAGGGTAAGTCCTTCGAAGACTCCTGTGCGGCCAACGGCCACTGGTCCTACAGGGAAAAACTGA 1365 0.4051 GISRKFKSNCLLFQTTSVSLSPSYSNYHFPFLIIHRSRALFSSVLICHFSLPILLIVISFFLYTHSFHNYPFSFICLTTHFYNNPFSFFVLIFLNRKLCSIKLFFNYFFLSFSVIKKHIFWVCLDTVDCVGFFSLLFFIVGWCFIEFDSMAAVAENSVDAVVPAPTKLDSKPKPHDSEFNVQNLVDMFKKLNPLAEEFFPSSYSQYDHAYQSYNQFQPNNFVATNMPLVNGHNPNNGRRSGNFIHGRGGRRVSAARLPKPQREDSVRRTVYVSEVDQDVTEERLAALFSTCGQVIDCRICGDPHSVLRFAFVEFTDEYGARAALSLDGTVLGSFPVKVLPSKTAILPVNPTFLPRSGDEREMCTRTVYCTNIDKKVSHAEVKQFFESSCGEVTRLRLLGDHQHLSRIAFVEFAMAESAILALGCSGMFLGIQPVRVSPSKTPVRPTATGPTGKN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0616 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 343 IPR000504 GO:0003723
Lal1g0616 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 441 IPR000504 GO:0003723
Lal1g0616 454 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 150 448 - -
Lal1g0616 454 SUPERFAMILY RNA-binding domain, RBD 356 446 IPR035979 GO:0003676
Lal1g0616 454 SUPERFAMILY RNA-binding domain, RBD 233 344 IPR035979 GO:0003676
Lal1g0616 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 430 IPR000504 GO:0003723
Lal1g0616 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 336 IPR000504 GO:0003723
Lal1g0616 454 MobiDBLite consensus disorder prediction 241 261 - -
Lal1g0616 454 CDD RRM1_CID8_like 266 345 IPR034823 -
Lal1g0616 454 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 150 448 - -
Lal1g0616 454 SMART rrm1_1 366 437 IPR000504 GO:0003723
Lal1g0616 454 SMART rrm1_1 269 339 IPR000504 GO:0003723
Lal1g0616 454 Gene3D - 235 344 IPR012677 -
Lal1g0616 454 Gene3D - 353 446 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0616 Lal-Chr1 3933690 3938119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0616 260 422 Eukaryotic Initiation Factors Gene Family AT1G34140 25.904 1.95e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0616 - - gmx:100818291 421.394