Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0598 ATGTCACATTCCGATAAATCTGTTTCCGAGTTAGGTCTCGGTTCACTCAGTAACCGCTTCCGTGACTCATTCAGTTGCGAGGCTAACAAACCCGATTTCCGAGAGCTCCATCTGGCTTCACCTGTTTCGCCATTGCGGACTCGCCACCACCGTAGTGCAACTGCACCCGCCACCAGTAGCAGCAGTTCCGGTTCATCCGGTTCGCTTTCTGGTCGGACCGGACCTAACCCGATTTCGAAGAGATCCGATTCCGGCGAGCTTTCCGGTTCCAGCGAGAACAATAGTCCTACCGCGGCAGCAGGAAATGTTCACCGCACTTTTAAATCAGGTTCAAGATCCGATTCGGGTTCGGGTTCATCGCAGCCGTTGATATATTCTGGTCAAATTCAAAGATCTCACTCATCCTCTTCCTCCGCTGTAAATTCGCCGCCGTTGAATGTACTTCCCGCCGGAAACATATGCCCCTCCGGCAGGGTTCTTAAATCCAGCATGGCAGCGGCTAACCGGAGCTCCAGGCCTGATGTTTTGGGCACCGGCACGGGGAATTACGGCCACGGAAGCATAATGCGTGGCGGCGGCAAAAGTGGAAGCGGCAGCAACAGCGGTGACAGTGTTGCAAATGTGAGGGTCAGTGGTAGTGAATCAGTGAAGAGAGGAGTGGGGAGTGCGGATCCAGAAGAACTGAAGAGAGCAGGGAATGAACAGTATAAGAGGGGTCATTTTTCAGAGGCATTGTCTTTGTATGATCGGGCAATTGCATTGTCTCCGGGGAATGCCGCGTACCGGAGCAACCGGGCTGCGGCATTGACCGGTTTGGGAAGGTTGGGAGAGGCTGTGAGGGAGTGTGAGGAGGCTGTGAGGTTGGATCATAATTATGGAAGGGCACATCACCGTTTGGCTACTCTTTTTCTCAGGTTTGGACAAGTAGAGAATGCTAGGAAGCACTTATGTTATCGCGGGTTGCAGCCAGATCCTTCTGAGTTGCAGAAGTTGCAAATAGTGGAAAAACATATTAGCAAATGTGTAGATATGCGGAGGATAGGAGAGTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTATTGCTACTGGAGCCGACTCTTCTATTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAAATCGATGATGCGGATTCAAGTTTTTTACATATTCCCAAATGGGAATCACATACCATTTCCTTATCCCAGGCAAGATTTTTTGGGATGCTTTCCGAAGCATATTGCTACTTTGTTAGAGCACAGATTGATATGGCTTTTGGAAGGTTTGAGAATGCAGTTGCAGCTGCTGAGAAAGCTAGTCAGATTGATCCCCGAAATGTTGAAGTTGCAGTTTTGCTCAACAATGTGAGGATGGTGGCTAGAGCTCGAGTGCGTGGCAATGATCTTTTCAAATCGGAAAGATTCACTGAGGCATGCTCAGCATATGGTGAAGGTTTGAGGCTTGACCCTTCGAACTCTGTTCTCTATTGCAACAGAGCAGCATGTTGGTTTAAGCTTGGAGAATGGGAAAGATCAATTGAAGACTCCAATCAAGCTTTACTTATCCTACCAAATTACAAAAAAGCCCTTCTTCGAAGGGCTGCGTCAAATATCAAGCTAGAAAGATGGGCAGAAGCAGTAAAGGATTATGAGGTCTTGCGGAGAGAACTTCCAGATGACAACGAAGTTGCTGAAGCTCTATTTCATGCAGTTGTTGCATTAAAGAAATCCCGTGGGGAAGAAGTACATAATTTAAAATTTGGTGGTGAAGTAGAGGCCATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTATCAGGTGTTTCTGTTGTCCATTTTCAAACCCCCTCAAACTTGCAATGCAAGCAAATATCACTGTTTTTGGATACACTATGCAGTCGCCATCCGTCTATTAACTTCCTCAAGGTGGATATTGAAGAAAACCCAACAGTTGCAACTGCTGAGAATGTTAGGATTATACCAACCTTCAAGATCTACAAAAATGGCAGTCTAGTGAAGGAAATTGTATGCCCTGGTCGTGATATGTTGGAACACTCCATTAAGCACTACAGCATTTAG 2094 0.4694 MSHSDKSVSELGLGSLSNRFRDSFSCEANKPDFRELHLASPVSPLRTRHHRSATAPATSSSSSGSSGSLSGRTGPNPISKRSDSGELSGSSENNSPTAAAGNVHRTFKSGSRSDSGSGSSQPLIYSGQIQRSHSSSSSAVNSPPLNVLPAGNICPSGRVLKSSMAAANRSSRPDVLGTGTGNYGHGSIMRGGGKSGSGSNSGDSVANVRVSGSESVKRGVGSADPEELKRAGNEQYKRGHFSEALSLYDRAIALSPGNAAYRSNRAAALTGLGRLGEAVRECEEAVRLDHNYGRAHHRLATLFLRFGQVENARKHLCYRGLQPDPSELQKLQIVEKHISKCVDMRRIGEWKSVLREVDAAIATGADSSIQLFMCRAEAFLKLHQIDDADSSFLHIPKWESHTISLSQARFFGMLSEAYCYFVRAQIDMAFGRFENAVAAAEKASQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGEWERSIEDSNQALLILPNYKKALLRRAASNIKLERWAEAVKDYEVLRRELPDDNEVAEALFHAVVALKKSRGEEVHNLKFGGEVEAISGLEQFRAAISLSGVSVVHFQTPSNLQCKQISLFLDTLCSRHPSINFLKVDIEENPTVATAENVRIIPTFKIYKNGSLVKEIVCPGRDMLEHSIKHYSI 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0598 697 MobiDBLite consensus disorder prediction 52 145 - -
Lal1g0598 697 MobiDBLite consensus disorder prediction 193 211 - -
Lal1g0598 697 MobiDBLite consensus disorder prediction 220 235 - -
Lal1g0598 697 ProSiteProfiles TPR repeat profile. 417 450 IPR019734 GO:0005515
Lal1g0598 697 Gene3D Glutaredoxin 582 697 - -
Lal1g0598 697 Pfam Thioredoxin 602 685 IPR013766 -
Lal1g0598 697 SUPERFAMILY Thioredoxin-like 501 695 IPR036249 -
Lal1g0598 697 MobiDBLite consensus disorder prediction 164 235 - -
Lal1g0598 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 15 695 - -
Lal1g0598 697 SUPERFAMILY TPR-like 224 453 IPR011990 GO:0005515
Lal1g0598 697 SMART tpr_5 497 530 IPR019734 GO:0005515
Lal1g0598 697 SMART tpr_5 259 292 IPR019734 GO:0005515
Lal1g0598 697 SMART tpr_5 463 496 IPR019734 GO:0005515
Lal1g0598 697 SMART tpr_5 417 450 IPR019734 GO:0005515
Lal1g0598 697 SMART tpr_5 225 258 IPR019734 GO:0005515
Lal1g0598 697 SMART tpr_5 531 564 IPR019734 GO:0005515
Lal1g0598 697 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Lal1g0598 697 Pfam Tetratricopeptide repeat 419 450 IPR019734 GO:0005515
Lal1g0598 697 CDD TRX_family 602 693 - -
Lal1g0598 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 15 695 IPR044534 -
Lal1g0598 697 MobiDBLite consensus disorder prediction 28 147 - -
Lal1g0598 697 Pfam Tetratricopeptide repeat 231 288 - -
Lal1g0598 697 Gene3D Tetratricopeptide repeat domain 223 581 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0598 Lal-Chr1 3831347 3835015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0598 462 533 U-box Gene Family AT3G07370 37.500 9.67e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0598 - - adu:107459775 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0598 1 3831347 3835015 Lal1g0598 1 3831347 3835015 ECH
Lal1g0598 1 3831347 3835015 Lal9g0546 9 3691734 3695475 LSH
Lal20g0371 20 2977423 2982496 Lal1g0598 1 3831347 3835015 PCT
Lal11g1461 11 17911908 17915954 Lal1g0598 1 3831347 3835015 PCT
Lal1g1620 1 18612298 18616289 Lal1g0598 1 3831347 3835015 PCT
Lal1g0598 1 3831347 3835015 Lal10g0665 10 14463973 14467528 PCT
Lal1g0598 1 3831347 3835015 Lal8g0739 8 5275874 5279357 PCT