Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0579 ATGGATAGCTACTACCACCATTACTCTGATAACAATAACAATGATTCACTTCTACCACCTGGTTTTCGTTTTCACCCCACTGATGAGGAGCTTATCACATACTACCTTCTCAAGAAGGTTCTTGACAACACCTTCACTGCTAGAGCCATCACTGAAGTTGACCTCAACAAGTGTGAGCCATGGCAACTTCCAAAGAAAGCGAAGATGGGTGAGAAGGAATGGTACTTCTTTAGCCTACGTGACAGGAAGTACCCAACAGGGTTACGTACTAATAGGGCCACAGAAGCTGGTTACTGGAAAGCTACTGGGAAAGATAGAGAGATTTATAGCTCCAAAACTTGTGCACTTGTTGGTATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCTCCTAAAGGTGAAAAGAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCGTACCATTATCTCTCTAGGAGCTCCAAGGATGAATGGGTTATATCCCGTGTGTTCCAGAAGAGCACCACAGGTGGTGGCTCCACCGTGTCTGCCACCGCCACTAGTTGTTCCAAGAAGACAATAGTTAGCACTTCATCTGCCAGCATGAGCCTATGTCCTGAACCTGATTCACCGTCCTCCATTTACCTTCCACCACTTCTGGACTCTTCTCCTTACACCATCAGCAACGCCGCCGCATTCAACGACCGTGATAGTTGCTCCGACGGAAGCACCACCGCCGCCCAAAGAGAGCACGTGTCCTGTTTCTCCACATTCTTTGCCAACAACTTCAACAATGCCACCTTTGACCTTGTTCCACCGCCGCCACAGAATCCTCTTAATCTTGATCCTTTCACTCGGTTCCAACGCAATGTTGGTGTTTCTGCCTTCCCTAGCTTGAGATCACTCCAAGATAACCTTCAGCTGCCGTTCTTTTTCTCCCCCACCCCAGTTCACGGCAGTGGTTCAAATGACATGGCTGCCGCCGGGAACTGGCCCATGGCGGAGGAGGAGAAAGTCGCGGTGGTTGATGGTGGTTCCAGCAAGGGGCTGGGGCATTCTGAGCTTGATTGCATGTGGGGCTATTGA 1077 0.4893 MDSYYHHYSDNNNNDSLLPPGFRFHPTDEELITYYLLKKVLDNTFTARAITEVDLNKCEPWQLPKKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSTTGGGSTVSATATSCSKKTIVSTSSASMSLCPEPDSPSSIYLPPLLDSSPYTISNAAAFNDRDSCSDGSTTAAQREHVSCFSTFFANNFNNATFDLVPPPPQNPLNLDPFTRFQRNVGVSAFPSLRSLQDNLQLPFFFSPTPVHGSGSNDMAAAGNWPMAEEEKVAVVDGGSSKGLGHSELDCMWGY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0579 358 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Lal1g0579 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 355 - -
Lal1g0579 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 12 355 - -
Lal1g0579 358 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Lal1g0579 358 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Lal1g0579 358 ProSiteProfiles NAC domain profile. 18 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0579 Lal-Chr1 3713261 3715059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0579 1 358 NAC Transcription Factor Family AT5G53950 51.813 2.09e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal1g0579 NAM 5.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0579 - - cam:101501114 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0579 1 3713261 3715059 Lal1g0579 1 3713261 3715059 ECH