Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0569 ATGAACAACAACATCAACAGGGTCCACAGAATCCTTTTACCACCATCAACACCACCACCACCTTCTCCTCCTATATTTTCCTTCATTGCTGCTCTCATAATTTCAATGCTAATCTTCATGTGCATCTATGTTTTCTCTGTCATTGTTTCTGTGGCTATTCTCCTCACCCTTTTCATCACCAGCATGTACCTTCTCAGGTATATCAATGATAGGCATGAAACATTGGGTACTGACATGAGAGAAAGGAACATCTTTTATGGTCAAATCCCACAAAATAACCAAAGGGTAGTGAGGTTTTTTGATAAACTTTTCTGGGTTGTTGAGGAAAGAGGTGGTGGAGATAACAGGAGAGAAGGGTCAAATAAGAAACTTATAGGGTCTGTTGTATGTTTTGGAAGCCAAGAAATAATGACAAGTTCCAGTGACTGTGCAATTTGCTTAGAGGATTTCAAGGAAGGAGAAGAGTGCTTAGTTTTTCCAATTTGTGAACATCTTTTTCATTTGATTTGTATCCATCATTGGTTAGAGAACAAGCCTTCATGCCCAATTTGTCGCCATTGTATCCCAGCAAACATGGTCACAAAAACTAGAAGCATTGAAGTATTGGATAATTTAGTTTAA 621 0.3833 MNNNINRVHRILLPPSTPPPPSPPIFSFIAALIISMLIFMCIYVFSVIVSVAILLTLFITSMYLLRYINDRHETLGTDMRERNIFYGQIPQNNQRVVRFFDKLFWVVEERGGGDNRREGSNKKLIGSVVCFGSQEIMTSSSDCAICLEDFKEGEECLVFPICEHLFHLICIHHWLENKPSCPICRHCIPANMVTKTRSIEVLDNLV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0569 206 Pfam Ring finger domain 142 185 IPR001841 -
Lal1g0569 206 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 4 193 - -
Lal1g0569 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 191 IPR013083 -
Lal1g0569 206 SUPERFAMILY RING/U-box 134 191 - -
Lal1g0569 206 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 193 - -
Lal1g0569 206 SMART ring_2 143 184 IPR001841 -
Lal1g0569 206 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0569 Lal-Chr1 3660544 3661164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0569 26 191 C3H Transcription Factor Family AT1G53010 29.050 1.18e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0569 - - lang:109363523 363.229