Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0545 ATGGCGATGAAGGCAGCAGTGGCGGCGGCGCCCCGTGGTTTGAGGCGTTTTTTCTGCACAAATCCAACTTCTTCTACTTTCCCGTTCGTTACTCCGCCGGCTGCCGGGGCCACTTCTGCTCGACAGATGGCGGATCCCAACACCAACCTCTTCATCTCCGGGCTTAGCAAACGTACTACCACAGAAAGGTTACGGGAAGAATTTGCGAAGTTCGGTGAAGTTGTTCATGCTAGGGTGGTAACAGACAGAGTATCAGGCTACTCTAAGGGGTTTGGTTTTGTGAAATATGCTACTATTGAAGAGGCTGGAAAGGGCATCGAGGGCATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCGGAGTATGCAAGACCAAGACCACCACCGGGACAACCTGTAGATAATCCGACTCCATATTATGGCGGGCGGTGA 435 0.5149 MAMKAAVAAAPRGLRRFFCTNPTSSTFPFVTPPAAGATSARQMADPNTNLFISGLSKRTTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAGKGIEGMDGKFLDGWVIFAEYARPRPPPGQPVDNPTPYYGGR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0545 144 SUPERFAMILY RNA-binding domain, RBD 28 143 IPR035979 GO:0003676
Lal1g0545 144 MobiDBLite consensus disorder prediction 125 144 - -
Lal1g0545 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Lal1g0545 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 116 IPR000504 GO:0003723
Lal1g0545 144 PANTHER TRANSFORMER-2-RELATED 1 141 - -
Lal1g0545 144 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 141 - -
Lal1g0545 144 SMART rrm1_1 49 122 IPR000504 GO:0003723
Lal1g0545 144 Gene3D - 31 132 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0545 Lal-Chr1 3509347 3511586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0545 47 125 Eukaryotic Initiation Factors Gene Family AT4G34110 34.177 1.91e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0545 - - gmx:100789351 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0545 1 3509347 3511586 Lal2g0540 2 3250956 3253394 LSH