Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0537 ATGGTTTCCCGGGAAAACACGAATTGGATTTTGGAATTCGGGTTGATTGAAGATATTCCCGTCCCTGATTCAACCTTCAATTGGGCCCCACAACCCTTCAACCCTTCTTCTAATGTTGGTGTTGAAATTGATGGCACATTGGGGGATTCTGGTGGTTTCAAAGAGTCCGGCTCAAAGAAGAGGGGTAGATCTGAGGCATGTACTGCTTCTAGCTCCAAAGCATGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAGTTTATTGAATTAGGCTCCATTTTGGAGCCCGGAAGGCCTCCAAAAACAGACAAGACTGCTATCCTGATTGATGCTGTCAATATGGTGACACAGTTACGGGGTGAAGCACAGAAGTTGAAAGACTCAAATATGGGCCTTCAAGACAAGATTAAAGATTTAAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAACAGAGGCTGAAGGCAGAGAAAGAGAGGTTGGAGCAGCAGCTGATGTCTATGAATGCACAACCTAGTTTCTTGCCTCCCCCTGCCGCAATCCCTGCCACAATCCCTGCCACTTTTTCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAAGCGGCGGGCAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTTCAGTGGATACCTCACAGGATCATGTACTCCGTCCTCCAGTTGCCTAA 774 0.4793 MVSRENTNWILEFGLIEDIPVPDSTFNWAPQPFNPSSNVGVEIDGTLGDSGGFKESGSKKRGRSEACTASSSKACREKLRRDRLNDKFIELGSILEPGRPPKTDKTAILIDAVNMVTQLRGEAQKLKDSNMGLQDKIKDLKAEKNELRDEKQRLKAEKERLEQQLMSMNAQPSFLPPPAAIPATIPATFSAQGQAAFAAQGQAAFAAQGQAAFAAQGQAAGNKLVPFISYPGVAMWQFMPPASVDTSQDHVLRPPVA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0537 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 134 IPR036638 GO:0046983
Lal1g0537 257 Gene3D - 71 149 IPR036638 GO:0046983
Lal1g0537 257 PANTHER BHLH TRANSCRIPTION FACTOR 1 257 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lal1g0537 257 SMART finulus 74 125 IPR011598 GO:0046983
Lal1g0537 257 Pfam Helix-loop-helix DNA-binding domain 72 119 IPR011598 GO:0046983
Lal1g0537 257 CDD bHLH_AtILR3_like 73 148 - -
Lal1g0537 257 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 257 - -
Lal1g0537 257 MobiDBLite consensus disorder prediction 45 72 - -
Lal1g0537 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 119 IPR011598 GO:0046983
Lal1g0537 257 Coils Coil 116 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0537 Lal-Chr1 3452330 3455207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0537 1 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 63.498 1.45e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g0537 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0537 - - gmx:100783689 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0537 1 3452330 3455207 Lal1g0537 1 3452330 3455207 ECH
Lal1g0537 1 3452330 3455207 Lal9g0470 9 3121585 3124293 LSH
Lal8g0866 8 6292156 6294893 Lal1g0537 1 3452330 3455207 PCT
Lal1g0537 1 3452330 3455207 Lal8g0866 8 6292156 6294893 PCT