Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0509 ATGTTTGGGAGAGCACCGAAAAAGAGTGATAACACCAGATACTATGAAATTCTCGGTGTTTCCAAGAACGCTGCTCAGGATGATCTCAAAAAGGCTTACAAGAAAGCTGCTATTAAGAATCACCCCGATAAGGGTGGTGATCCTGAAAAGTTCAAAGAGCTTGCCCAAGCTTATGAGGTTCTGAGTGACCCTGAGAAGCGTGAGATATATGATCAATATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGCGGTGGTGGTGGCGGCCATGACCCCTTTGACATCTTCAGTTCTTTCTTTGGTGGCGGTGGAGGTCCATTTGGTGGTGGTAGCAGCCGAGGACGGAGGCAGAGACGTGGAGAAGATGTGGTTCACCCTCTCAAGGTCAGCTTGGAGGACCTTTACAGTGGGACATCTAAGAAGCTCTCCCTATCTAGAAATGCCCTATGCTCAAAGTGCAATGGGAAAGGGTCTAAGTCTGGTGCTTCCATGAAGTGTGCTGGTTGTCAAGGAACTGGAATGAAGGTTTCTATCAGGCACCTTGGTCCTTCCATGATTCAGCAAATGCAACATGCTTGCAATGAATGTAAGGGTACTGGAGAAACTATCAACGACAAGGACCGCTGCCCCCAGTGCAAGGGAGAGAAGGTTGTTCAAGAGAAGAAAGTACTTGAAGTTATTGTGGAGAAGGGTATGCAGAATGGTCAGAAGATTACATTCCCCGGTGAAGCTGATGAAGCGCCTGACACAGTTACTGGGGATATTGTCTTTGTCCTTCAGCAAAAGGAACACCCCAAGTTCAAGAGAAAGGCAGAGGATCTCTTTGTGGAGCACACTTTGTCCCTCACTGAGGCTTTATGTGGCTTCCAATATGTGCTGGCTCACTTGGATGGTCGTCAACTTCTTATCAAGTCAAATCCCGGCGAAGTTATCAAGCCTGATTCATACAAGGCAATTAATGATGAGGGAATGCCATTGTACCAGAGGCCATTCATGAAGGGGAACCTTTACATTCACTTCACTGTGGATTTCCCAGAATCTCTAAGTCTTGATCAGGTTAAGGCATTAGAGGCTGTTCTGCCACCAAAGCCTTCATCACAGTTAACAGACATGGAGCTAGACGAGTGTGAGGAGACTACACTGAATGATGTGAACATGGAGGAAGAATCCAGAAGGAAGCAGCAGCAAGCTCAGCAAGAGGCTTATGATGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAGTGTGCCCAGCAGTAG 1263 0.4727 MFGRAPKKSDNTRYYEILGVSKNAAQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGGHDPFDIFSSFFGGGGGPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYSGTSKKLSLSRNALCSKCNGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTEALCGFQYVLAHLDGRQLLIKSNPGEVIKPDSYKAINDEGMPLYQRPFMKGNLYIHFTVDFPESLSLDQVKALEAVLPPKPSSQLTDMELDECEETTLNDVNMEEESRRKQQQAQQEAYDEDDDMPGGAQRVQCAQQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0509 420 Pfam DnaJ central domain 150 216 IPR001305 GO:0031072|GO:0051082
Lal1g0509 420 CDD DnaJ 14 63 IPR001623 -
Lal1g0509 420 ProSiteProfiles Zinc finger CR-type profile. 137 221 IPR001305 GO:0031072|GO:0051082
Lal1g0509 420 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 420 - -
Lal1g0509 420 SMART dnaj_3 12 66 IPR001623 -
Lal1g0509 420 CDD DnaJ_C 121 348 - -
Lal1g0509 420 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lal1g0509 420 PRINTS DnaJ domain signature 15 33 IPR001623 -
Lal1g0509 420 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lal1g0509 420 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lal1g0509 420 SUPERFAMILY Chaperone J-domain 8 112 IPR036869 -
Lal1g0509 420 Gene3D DnaJ domain 10 110 IPR036869 -
Lal1g0509 420 Hamap Chaperone protein DnaJ [dnaJ]. 10 384 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lal1g0509 420 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 147 219 IPR036410 -
Lal1g0509 420 MobiDBLite consensus disorder prediction 378 420 - -
Lal1g0509 420 Gene3D - 264 346 - -
Lal1g0509 420 Pfam DnaJ C terminal domain 124 345 IPR002939 -
Lal1g0509 420 MobiDBLite consensus disorder prediction 384 400 - -
Lal1g0509 420 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Lal1g0509 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 121 265 IPR008971 GO:0006457|GO:0051082
Lal1g0509 420 Pfam DnaJ domain 14 71 IPR001623 -
Lal1g0509 420 Gene3D - 111 262 - -
Lal1g0509 420 Gene3D - 150 216 - -
Lal1g0509 420 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 420 IPR044713 GO:0006457|GO:0030544
Lal1g0509 420 CDD DnaJ_zf 150 216 IPR001305 GO:0031072|GO:0051082
Lal1g0509 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 267 356 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0509 Lal-Chr1 3277186 3279635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0509 14 73 C2H2 Transcription Factor Family AT1G74250 42.029 1.75e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0509 1 3277186 3279635 Lal2g0390 2 2360098 2362751 LSH
Lal1g0509 1 3277186 3279635 Lal9g0354 9 2362102 2364690 LSH