Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0506 ATGAGTGATATACGAAAGTGGTTCATGAAATCCCATGCTAAGGTCAATGACAGTGTTTCTAAGCCTTCTTCCGATGATAAAGTCCAGCCCCAGAAAACGGTGCCTGGAGGCCAAGAAAGTTCAGGTTCCGGGAGGAGGAAGACTAGTAAATATTTTGATAAAGATAAAGAAAAGGTGAAAGAAGAGAAAGAAACACCAAAGCTCCCTGCTAAAAGAAAGAATGTGAAGGACAGCGAGGAATTACAGATACCCCGCCCTTCAAAGAAAATTCATGAAGCGGATGAAGACGATTCTGCCTTGCCCACATCTTATAATAAGTTAGCTGAATCTACTCCGGCAAAAAAATTAAAGAGTAGATCAGGTAGGGGGACCCCCCAGAAATCTGCAGATTTGGAAGAAAATGATGAAGATGATTACAAAGATAATGTTACTCCAGCTAAATCTGGTGGAAGGGGTCGGGGTGGACGAGGGGCGTCGACACCATCAACTGGTGGTAGGGGTAGAGGGGGTGGTAGGGGTGGATTTATGAATTTTGGTGAAAGAAAAGATCCTCCACATAAAGGAGAAAAGGATGTCCCTGAAGGTGCTCCTACATGTTTAGCTGGTTTAACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCCGAAGACTTGATTAAACGCCATGGTGGCCGTGTTACAGGATCAGTCAGCAAGAAAACAAGTTATCTGTTATGTGATGAAGACATTGGGGGACGGAAGTCTGAAAAAGCAAAAGAGCTTGGGACTTCCTTCCTCACAGAGGATGGATTATTTGATATGATTCGTGCATCAAAACCTGTTAAAGCTCCTTTGAAAGAAGAACCCAAGAAATCTCTGACTAAGGCTGTTGCATTAGCATCCCAGTCAAAAGGTCCTCCAAAAGTAGAAGCAAAGGTCTCTCTGCCTTCATCCTCGCCTTCTACCCAAGCCAAGCCAAAGACAGCAACTATCACTCAATCTTCTTCAATGTGGACAGATAAACATCGACCTAAAAGTCCTAAGGATATCATAGGGAACCAGTCACTTGTGTCACAGCTTCGAAATTGGTTGAAAGCTTGGAATGAGCAATTCCTAGAGACTGGTAGTAATAAAAAAGTAGGTAAAAAGCAAACTGGATCTGTTTCCCAAAAAGCTGTCTTGTTAAGTGGAACGCCTGGCATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGGAAAAGGAATTAGTGGAAGCACTAAGAATTCTGTCAAGGAACTTGTAACCAATGAGGCCCTTGGTGCTAATATGGATCGGTTGGTCTTGCTTCATCATATGTCAAAGCTTTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCGGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCCATTATCTGCATTTGCAACGACCGTTACAGCCAGAAACTAAAAAGTCTTGTGAACTACTGTCTGCTTCTTAGTTATCGAAAACCTACAAAGCAACAGATGGCAAAGAGGCTGATGGATGTTGCAAAGGCTGAGGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTGAATGGAGATATGCGCATGGCAATAAATCAGTTACAATATATGAGCCTCTCCATGTCAGTTATTAACTTTGATGATATCAGGCAGCGCTTTCTAAAAAATTCGAAGGATGAAGAGATTTCGCCATTTACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAATTGAAAATGGATGAGAGGAATAATCTTAGCATGAGCGATCCTGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCGGGGCTGGTAAGGATGACAGTGGTATAACACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAAATTCGAAGATATCAACAATGGCAGCTCTCTCAAACTAGTTCTCTCGTATCGTGTATAATTCCTGCTTCACTACTGCATGGGCAAAGGGAAATACTCGAACAGGGAGAACGGAATTTTAATCGGTTTGGTGGGTGGCTTGGGAAGAACTCGACAAGGGGTAAAAACATGAGACTTTTGGATGATCTTCATAGCCACATTCTTGCTTCTCGTGAAACTAGTCCGGGAAGGGATACTATACGCTTGGAATACCTCACTCTGCTTCTTCAACAACTGACAGAACCACTGCGAACCCTGCCCAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACATACTCTATCACCCAGGAAGATTTTGACACTATTGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCTTCTAGATGGCATACCGCCCGCCGTCAAGTCAGCCTTGACAAAGGCGTATAAGGAACAAAGCAAAAATCGGATGGTGCGAGCTGCAGATCAAGTCACTCTTCGGATGGTGCGAGGTTCTGACCGAGTCACTCTTCCTGAAATAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATTCTAGAACCAGCTGATGAAGGAATTGAACAAGGCGAAGGTGAAACCTTGGACGAGAGTGAAGATGAGAACACCTCTGACACTGAGGAGTTGGGCACTACCACTGGGGAGAAGCTGCAGTCGGAACTTCAAAGCTTGAATTCAAAAGCCGTTCAAGTACATTTGGAGTTGAAGGGAACGGGCAATTCAAGTTCGAAGAAGCCATCTGCTGGTAAAGGAAAAGGTGCTTCTGTATCTGCACAGAAGGCTGGCCAAACATCAAAAAGAAAAAGGTGA 2892 0.4326 MSDIRKWFMKSHAKVNDSVSKPSSDDKVQPQKTVPGGQESSGSGRRKTSKYFDKDKEKVKEEKETPKLPAKRKNVKDSEELQIPRPSKKIHEADEDDSALPTSYNKLAESTPAKKLKSRSGRGTPQKSADLEENDEDDYKDNVTPAKSGGRGRGGRGASTPSTGGRGRGGGRGGFMNFGERKDPPHKGEKDVPEGAPTCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPVKAPLKEEPKKSLTKAVALASQSKGPPKVEAKVSLPSSSPSTQAKPKTATITQSSSMWTDKHRPKSPKDIIGNQSLVSQLRNWLKAWNEQFLETGSNKKVGKKQTGSVSQKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIGKGISGSTKNSVKELVTNEALGANMDRLVLLHHMSKLSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAERVNGDMRMAINQLQYMSLSMSVINFDDIRQRFLKNSKDEEISPFTAVDKLFGFNAGKLKMDERNNLSMSDPDLVPLLIQENYINYRPSGAGKDDSGITRMNLIARAAESIADGDIVNVQIRRYQQWQLSQTSSLVSCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTRGKNMRLLDDLHSHILASRETSPGRDTIRLEYLTLLLQQLTEPLRTLPKAEAVEKVVEFMNTYSITQEDFDTIVELSKFKGHPNLLDGIPPAVKSALTKAYKEQSKNRMVRAADQVTLRMVRGSDRVTLPEIKKAPKKRIAAILEPADEGIEQGEGETLDESEDENTSDTEELGTTTGEKLQSELQSLNSKAVQVHLELKGTGNSSSKKPSAGKGKGASVSAQKAGQTSKRKR 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0506 963 MobiDBLite consensus disorder prediction 280 347 - -
Lal1g0506 963 MobiDBLite consensus disorder prediction 901 942 - -
Lal1g0506 963 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 18 939 - -
Lal1g0506 963 PANTHER REPLICATION FACTOR C SUBUNIT 1 18 939 - -
Lal1g0506 963 SUPERFAMILY BRCT domain 195 277 IPR036420 -
Lal1g0506 963 CDD HLD_clamp_RFC 530 588 - -
Lal1g0506 963 Gene3D BRCT domain 172 274 IPR036420 -
Lal1g0506 963 MobiDBLite consensus disorder prediction 16 45 - -
Lal1g0506 963 PIRSF RFC1 1 943 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Lal1g0506 963 Gene3D - 332 529 IPR027417 -
Lal1g0506 963 MobiDBLite consensus disorder prediction 311 337 - -
Lal1g0506 963 ProSiteProfiles BRCT domain profile. 195 278 IPR001357 -
Lal1g0506 963 MobiDBLite consensus disorder prediction 880 900 - -
Lal1g0506 963 Gene3D - 602 711 - -
Lal1g0506 963 Gene3D - 530 600 - -
Lal1g0506 963 CDD BRCT_RFC1 195 273 - -
Lal1g0506 963 Pfam ATPase family associated with various cellular activities (AAA) 390 496 IPR003959 GO:0005524|GO:0016887
Lal1g0506 963 MobiDBLite consensus disorder prediction 874 963 - -
Lal1g0506 963 Pfam BRCA1 C Terminus (BRCT) domain 197 272 IPR001357 -
Lal1g0506 963 MobiDBLite consensus disorder prediction 13 196 - -
Lal1g0506 963 MobiDBLite consensus disorder prediction 46 99 - -
Lal1g0506 963 CDD AAA 386 493 - -
Lal1g0506 963 MobiDBLite consensus disorder prediction 179 193 - -
Lal1g0506 963 SMART AAA_5 386 531 IPR003593 -
Lal1g0506 963 SUPERFAMILY post-AAA+ oligomerization domain-like 601 746 IPR008921 GO:0003677|GO:0006260
Lal1g0506 963 Pfam Replication factor RFC1 C terminal domain 670 832 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lal1g0506 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 590 IPR027417 -
Lal1g0506 963 SMART BRCT_7 197 275 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0506 1 926 Core DNA Replication Machinery Family AT5G22010 65.503 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0506 K10754 - gmx:100790070 1340.87