LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0502	ATGGATTCAGATCCAGTTGGGACCTTCTTTCTCCACAAGCCACCAATTGTTCTAAACTCTTTCCCTTGTGAAGAAGACAACACAAAGTGGACACTGAGTCCTAATAGCAATAACATGGAGGCCACACTTAGGACCTCTTCACCTACACATAACACCACCACAATCCCTTTCCAAGTCAACAACCATGCCTCTTCATCTCATGATATGATCATAACAACAGAAATGGACTTCTTCTCTGACAACAACAACAACAACAACGTTGCCTCTTCTTCTGTCCCTGACAATGATCATATACATCATCATGCTACACCTACTAGGTTGGAATTCAAAGTAAACACTGGTCTGAATCTTCTTACTACCAACACTAGCAGTGATCAATCTATGGTGGAGGATGAGATATCACCTAATTCAGAAGACAAAAGAAGTAAGAATGAGAAGGCAGTTCTTGAAGCTGAGCTAGAGCGAATGAAGGTTGAGAATCAACGGTTGAAGGAGACTTTTGATGAGGTTAACACCAATTACAAAGCTTTGCAGATGCATGTGGTGAATTTGATGAGGGACCAGAAGGGAGAGGATGGAGAAGAAAGAGAAGTTTTTGATGGGAAAGTAGAAGAGAATAAGAAAAGGAAGCAAATTGAGAACAATGGGGTATTAGTGCCAAGGCAGTTTATGGATCTGGGTTTGGCTACAAACATTTCTGAGACTAAGATTGAAGATCCCTCTTCTTCATCAAGGGGAAGAAGTCAAGATAGATCAGGATCACCAGGAAATAATAATTTAGAGGTAGCTTCGAAGGAGTTAGGTAGTACTAGTAAGAATGTGAATGGGAGTGGTAGTGATGAAGGACTTGTGTTTGATCAAGAAAAGAAGGATTTTGGTAATGGTAGTAGGGGAATTGAAAGTCCTCCCAAAAATGTTGATCATGCCGAGGCTACTATGAGGAAGGCAAGAGTTTCTGTTAGAGCTAGATCAGAAGCACCAATGATCACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCTAAAGGAAACCCATGTCCTCGAGCTTATTATCGGTGCACCATGGCTTCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAGCAGTTCTTATCACAACATATGAAGGCAATCACAACCACCCTTTACCTCCAGCAGCAATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGTTGCTTTCAGGATCAATGTCAAGTGCTGACAGCTTAATGAATGCAAACTTCCTCAGTAGGACACTGCTTCCTTGCTCTTCAAGCATGGCATCTATCTCAGCATCTGCTCCATTTCCAACTGTTACATTGGACTTAACTCAAACTCCAAACCCTCTTCAATTCCCAAGGCCTCCAATCCAGTTCCAAATACCCTTCCCTCAGAGTTTTGCCAACTCCTCAGCCTCATTAATGCCTCAGATATTTAATCAGGCACTCTATAACCAATCTAAGTTTTCTGGTCTTCAAATGTCTCAAAATGGAGTAGTAGACCCTTCTCAATTAGGTGGTAATCAAGCTACTCCACCACACCTTGCTGATTCAGTTAGTGCTGCCACTGCAGCCATTGCAACTGATCCTAACTTCACTGCTGCTTTGGCAGCTGCTATCACTTCCATTATTGGTGGTGGTGGTGGTGGTGGTGGTGTTGCTCAGGCAAACAACAACAGCACAAGCAATAATGGCAGCAACAGCAATGACAATATCACAACTAGCAACCAGAATAGCAACAATGGAAAGCAATAA	1779	0.4289	MDSDPVGTFFLHKPPIVLNSFPCEEDNTKWTLSPNSNNMEATLRTSSPTHNTTTIPFQVNNHASSSHDMIITTEMDFFSDNNNNNNVASSSVPDNDHIHHHATPTRLEFKVNTGLNLLTTNTSSDQSMVEDEISPNSEDKRSKNEKAVLEAELERMKVENQRLKETFDEVNTNYKALQMHVVNLMRDQKGEDGEEREVFDGKVEENKKRKQIENNGVLVPRQFMDLGLATNISETKIEDPSSSSRGRSQDRSGSPGNNNLEVASKELGSTSKNVNGSGSDEGLVFDQEKKDFGNGSRGIESPPKNVDHAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCAEDRAVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSLMNANFLSRTLLPCSSSMASISASAPFPTVTLDLTQTPNPLQFPRPPIQFQIPFPQSFANSSASLMPQIFNQALYNQSKFSGLQMSQNGVVDPSQLGGNQATPPHLADSVSAATAAIATDPNFTAALAAAITSIIGGGGGGGGVAQANNNSTSNNGSNSNDNITTSNQNSNNGKQ	592

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal1g0502	592	MobiDBLite	consensus disorder prediction	246	280	-	-
Lal1g0502	592	ProSiteProfiles	WRKY domain profile.	324	390	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lal1g0502	592	SUPERFAMILY	WRKY DNA-binding domain	322	390	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lal1g0502	592	PANTHER	OS05G0567200 PROTEIN	51	582	-	-
Lal1g0502	592	Gene3D	WRKY domain	314	391	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lal1g0502	592	MobiDBLite	consensus disorder prediction	561	592	-	-
Lal1g0502	592	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	51	582	IPR044810	GO:0003700
Lal1g0502	592	Pfam	WRKY DNA -binding domain	331	388	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lal1g0502	592	MobiDBLite	consensus disorder prediction	232	305	-	-
Lal1g0502	592	MobiDBLite	consensus disorder prediction	121	144	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0502	Lal-Chr1	3222229	3227534	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g0502	68	554	WRKY Transcription Factor Family	AT1G62300	49.312	1.88e-126	381

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lal1g0502		WRKY	3.5e-24	CL0274

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0502	-		-	gmx:100127384	585.104

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal1g0502	1	3222229	3227534	Lal6g0068	6	405122	408042	ECH
Lal1g0502	1	3222229	3227534	Lal1g0502	1	3222229	3227534	ECH
Lal1g0502	1	3222229	3227534	Lal5g1472	5	17177574	17180501	ECH
Lal1g0502	1	3222229	3227534	Lal11g0428	11	3203910	3207024	ECH
Lal1g0502	1	3222229	3227534	Lal2g0402	2	2418316	2421446	LSH
Lal8g0034	8	300547	303484	Lal1g0502	1	3222229	3227534	PCT
Lal1g0502	1	3222229	3227534	Lal8g0034	8	300547	303484	PCT

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