Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0492 ATGTTCCAGCCAAATCTGGGTCAGTTTCACAACGCACTTGACAACATGGCTCAGAACACTTCTGAAAGTGATATCCCGAGAATGGATGAGTTTGACAGGTCTGGTAGTGAAAACCAGGAAGGTGCATCTGGTGAAGACCAAGAACCAAGCGCAAAGAAGAAGAGACGCTTTCACCGCCACACACAACACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTATCCACACCCTGATGACAAGCAAAGGAAGGAACTGAGCCGGGAGCTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGCACTCAGATGAAGACCCAACACGAGCGCCATGAGAACACCCAGCTCAGAAACGAAAATGACAAACTTCGAGCTGAAAACATAAGGTACAGGGAAGCTTTTAGCAATGCCGCATGTCCTAATTGTGGTGGACAAACTTCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGTTTGAAAATGCAAGGCTAAGAGAAGAGATTGATCGCATTTCTGCAATTGCTGCCAAGTACGTGGGAAACCCAGTGGTGAATTACTCAAATCTTTCTACTCTTCCTTCACGCCCATTAGAACTTGGAACTGGTGGCGGTTTTGGTGGCCAGTCAGCTGGTATTGGTGGTGGAGATATGTTTGGAGGTGGTGGAGATCTTCTAAGGTCAGTTAACGGACCCAGTGAATCTGACAAGCCAATAATAATTGAGCTTGCTGTTGCAGCTATGGAGGAGCTTATTGGGATGGCACAAATGGGTGAGCCTCTTTGGCTGACCACCCACACCCTTGATGGCACGTCCATTGTGCTAAATGAAGATGAATACATTAGGACATTTCCTCTAGGAATTGGCCCAAAACCTACAGGCTTCAAATCTGAAGCTTCTAGAGAAACTACTGTTGTTATCATGAATCATGTCAACCTTGTTGAGATTCTCATGGACGTGAATCAATGGTCCACAGTGTTCTCTGGTATTGTCTCAAAAGCGATGACTCTGGAAGTGCTATCAACGGGGGTAGCAGGGAACTGCAATGGTGCCTTACAAGTGATGACAGCAGAACTACAAGTACCTTCACCTCTTGTGCCAACTCGTGAGTATTATTTTGTAAGGTATTGTAAACAACATGTGAATGGGACTTGGGCAGTAGTGGATGTTTCTTTGGATAATCTGCGTCCTAGTCCTTCACCTAGATGTAGAAGAAGGCCTTCTGGCTGCTTAATTCAAGAAATGCCCAATGGCCACTCAAGGGTAACATGGGTAGAACATGTGGAAGTTGTTGATAGAGGTGTTCATAATCTTTACAAGCAGCTTGTTAATTCTGGAAATGCATTTGGTGCAAAACGTTGGGTTGCAACCTTAGATCGCCAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATACCCACAGTAGATATTGGAGTAATAACAAACCAAGAAGGGAGGAAGAGTATGCTGAAATTGGCTGAGAGAATGGTTATAAGCTTTTGTGGTGGAGTGAGTGCTTCTACTACTCACACATGGACCACACTGCAGACTGGGACAGGGTCTGATGATGTAAGGGTCATGACTCGTAAGAGTGTAGATGACCCAGGAAGACCCCCTGGTATTGTTCTTAGTGCTGCAACTTCTTTTTGGCTCCCAGTTCCACCTAAAAGAGTTTTTGATTTCCTCCGTGATGAGAATTCCAGAAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAATGGACGAGAAACTGGAAATTGTGTATCTTTATTTAGAGTGAATAGTACCAATTCAAGCCAGGGTAACATGTCAATATTACAAGAGAGTTGCAGTGATTCAACATGCTCTTTTGTTATATATGCTCCAGTAGATATTGTTGCAATGAATTTAGTTCTAAATGGAGGAGACCCAGACTATGTAGCCCTTCTTCCTTCAGGATTTGCAATCCTCCCAGATGGGTCAACAACACATGGAAATGGCATTGCTGAAACTGGCCATGGTGGATCACTTTTGACTGCTGCATTTCAAATATTGGTTGATTCAGTTCCAACAGCTAGGCTTTCTCTTGGTTCTGTTGCTACTGTTAATACTCTTATTGCTTGCACTGTTGAGAGAATCAAGGCTTCATTATCTCCTGAACTTCAAGACTAA 2190 0.4374 MFQPNLGQFHNALDNMAQNTSESDIPRMDEFDRSGSENQEGASGEDQEPSAKKKRRFHRHTQHQIQEMEAFFKEYPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRNENDKLRAENIRYREAFSNAACPNCGGQTSIGEMSFDEHHLRFENARLREEIDRISAIAAKYVGNPVVNYSNLSTLPSRPLELGTGGGFGGQSAGIGGGDMFGGGGDLLRSVNGPSESDKPIIIELAVAAMEELIGMAQMGEPLWLTTHTLDGTSIVLNEDEYIRTFPLGIGPKPTGFKSEASRETTVVIMNHVNLVEILMDVNQWSTVFSGIVSKAMTLEVLSTGVAGNCNGALQVMTAELQVPSPLVPTREYYFVRYCKQHVNGTWAVVDVSLDNLRPSPSPRCRRRPSGCLIQEMPNGHSRVTWVEHVEVVDRGVHNLYKQLVNSGNAFGAKRWVATLDRQCERLASAMATNIPTVDIGVITNQEGRKSMLKLAERMVISFCGGVSASTTHTWTTLQTGTGSDDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRETGNCVSLFRVNSTNSSQGNMSILQESCSDSTCSFVIYAPVDIVAMNLVLNGGDPDYVALLPSGFAILPDGSTTHGNGIAETGHGGSLLTAAFQILVDSVPTARLSLGSVATVNTLIACTVERIKASLSPELQD 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0492 729 MobiDBLite consensus disorder prediction 1 62 - -
Lal1g0492 729 SMART START_1 246 468 IPR002913 GO:0008289
Lal1g0492 729 CDD homeodomain 54 112 IPR001356 GO:0003677
Lal1g0492 729 Gene3D - 291 468 IPR023393 -
Lal1g0492 729 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 17 725 - -
Lal1g0492 729 Coils Coil 110 137 - -
Lal1g0492 729 Pfam Homeodomain 58 109 IPR001356 GO:0003677
Lal1g0492 729 Pfam START domain 247 468 IPR002913 GO:0008289
Lal1g0492 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 725 IPR042160 -
Lal1g0492 729 ProSiteProfiles START domain profile. 237 471 IPR002913 GO:0008289
Lal1g0492 729 MobiDBLite consensus disorder prediction 1 24 - -
Lal1g0492 729 SUPERFAMILY Bet v1-like 240 470 - -
Lal1g0492 729 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Lal1g0492 729 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Lal1g0492 729 SMART HOX_1 52 115 IPR001356 GO:0003677
Lal1g0492 729 SUPERFAMILY Homeodomain-like 45 111 IPR009057 -
Lal1g0492 729 CDD START_ArGLABRA2_like 241 467 - -
Lal1g0492 729 Gene3D - 39 128 - -
Lal1g0492 729 SUPERFAMILY Bet v1-like 487 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0492 Lal-Chr1 3113759 3118186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0492 1 726 Homeobox Transcription Factor Family AT1G05230 74.019 0.0 1097
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal1g0492 START 4.4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0492 K09338 - gmx:100809556 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0492 1 3113759 3118186 Lal1g0492 1 3113759 3118186 ECH
Lal1g0492 1 3113759 3118186 Lal2g0415 2 2482576 2488061 LSH
Lal1g0492 1 3113759 3118186 Lal9g0387 9 2559705 2566312 LSH
Lal25g0047 25 340502 347138 Lal1g0492 1 3113759 3118186 PCT
Lal1g0492 1 3113759 3118186 Lal25g0047 25 340502 347138 PCT