Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0486 ATGGAAGCTCTATGTGAGTTTTGTGGGGTTGTAAGAGCTGTGGTTTATTGCAAATCAGATTCTGCTCGGCTATGCTTGAACTGTGATGTGAGTGTACATGGTGCTAATTCTTTATCCTACAGACACTCCCGTTCTGTTCTATGTAACAAGTGCAATTCCCAAACAGCAATTGTCTACTGCATGGATGAAAAAATGTCTATATGTCAAGGTTGTGATTGGAACCATAAAGGGTGTTCTCTATTAGGACATAAGCGTCAGGCTTTGGAATGTTATAGTGGTTGTCCCTCTTTAACTCAATTGCCTAGCTTCTTGTCCTTTGTGATTGATGCCATTTCCTCATGTGGTGGTGGTTTAGATCATGGTTGGGGATCACTTAATACAACATTGAGTAATAAAAATGACACTTGTACTAGCAAGTCTTTTGAGCAAGAGCAACCAAATAATGATGATGCCATTGCCACTTTTGGTTTGGTCAGTGGCAAGTTGAATGAAATTGAAGAATGTGTTAAACCAGAGCCTTGGATTGAGCAACCTACCACCATTCCACTACCAAATCCAAATTACGCGCCGTACACAGTGGATCAGACAATTTTCTGTCCACAGGACTCGAACATTCCGGAGGCAACAAGTTCTATACTAATGACAACAGTGTTCAGAACCTGCACTCTGCAGGGTTCAGGAATCAGCGATGACGACGATCTCAACGTGGATAACTTAAAACTTAATTTTGAAAAGAGAAATGAAATCTTTGAATGCTCTCAAGTTGCCTCAAGATACCACCTTGACAATGGAGCAATTGATTGTTCATTAACAGAGAAAAAAGTATCATTTACAGAATCTAAATCTATTATTGAGAGTGCCATAGAGGCATCATCATCAGTCCAACAAAATTGTGTGGCTTTTCAGTCATCAAAGGATGATAGCCCAGCTAGTATGATGCAGGGTATCAACAATAATGCAAATTGTGTGCTTATGCCTCCTAGCTGCAATGAAAACATCAATATAGGATTAACTCATGGACAAGTTCATTCAAGCATGCCACTTTCATTGCCCAACATCACTGGTGAGAGTAGTAGTACTACAGATTTTCAAGATTGTGGATTACCACCAGGTTTTGTGACAGGTGAACCACCTCCTTGGCAATCGATTTTGGAGGCTTCGACCCCGCAAGCCAGGGAGAAAGCTAAATTGAGATACTTCGAGAAAAAGAAAACTCGGAGGTTTGGTAAGCAAATAAGATATGAATCTCGCAAAGCAAGGGCTGATACGAGAAGACGCGTGAAAGGTAGATTTGTGAAAGCTGGTGAAGAATTCGATTATGATCCTCGAGGGGGAAAGAGTTTCTAA 1347 0.4076 MEALCEFCGVVRAVVYCKSDSARLCLNCDVSVHGANSLSYRHSRSVLCNKCNSQTAIVYCMDEKMSICQGCDWNHKGCSLLGHKRQALECYSGCPSLTQLPSFLSFVIDAISSCGGGLDHGWGSLNTTLSNKNDTCTSKSFEQEQPNNDDAIATFGLVSGKLNEIEECVKPEPWIEQPTTIPLPNPNYAPYTVDQTIFCPQDSNIPEATSSILMTTVFRTCTLQGSGISDDDDLNVDNLKLNFEKRNEIFECSQVASRYHLDNGAIDCSLTEKKVSFTESKSIIESAIEASSSVQQNCVAFQSSKDDSPASMMQGINNNANCVLMPPSCNENINIGLTHGQVHSSMPLSLPNITGESSSTTDFQDCGLPPGFVTGEPPPWQSILEASTPQAREKAKLRYFEKKKTRRFGKQIRYESRKARADTRRRVKGRFVKAGEEFDYDPRGGKSF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0486 448 CDD Bbox1_BBX-like 4 47 - -
Lal1g0486 448 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal1g0486 448 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 3 443 - -
Lal1g0486 448 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Lal1g0486 448 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 443 - -
Lal1g0486 448 SMART bboxneu5 48 88 IPR000315 GO:0008270
Lal1g0486 448 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lal1g0486 448 ProSiteProfiles CCT domain profile. 392 434 IPR010402 GO:0005515
Lal1g0486 448 Pfam CCT motif 392 434 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0486 Lal-Chr1 3068530 3070934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0486 1 442 C2C2-CO-like Transcription Factor Family AT5G48250 35.903 1.41e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal1g0486 CCT 5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0486 - - lang:109363392 656.751