Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0482 ATGGTGAGAGTCCCTTGCTGTGAGAAGAATAATGGACTCAAGAAAGGTCCATGGACAACTGAGGAAGATGTTAAGCTCATCAACTACATTCAGACTCATGGACCAGGAAAATGGCGAAATCTCCCCAAGATTGCTGGTCTGCAAAGGTGTGGCAAGAGTTGCCGCCTCCGATGGACAAATTATTTGAGACCCGATATAAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAGGCTATTATTCAATTGCATAGTCTCATGGGAAACAAATGGTCTGCAATAGCAACAAGGTTGCCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAACACTCACATAAAGAAGAGGCTGCTTCGAAGTGGAATAGACCCAGTTACTCATACACCACGCCTTGACCTACTTAACATGTCCTCTATTCTGAGGACAGTTATGGGGAACCCTTCCCTTTTGAATCTACAAGGACTAATTGGTGCTCAAGCTTTGATGAACCCTGAGTTGTTAAACCTAGTTGCCACTGCCTCTCTTTTGGCTTCACAGAATAATCCACAACAACAACAACAACAACAACTACATTATAATGGGAATTATTGTCAAACACGAAACCAAGAGTTTAGTGAGTTCCAAACACCAACTCAAAGCAACAATGTGGATGGCTTCATGGGAAACTTAAGATGTTCAAGTTCCTTACAGAATTCAATTCCTACCTATTTGGATGAGAACATTGTTTTGCAACAAAACCAAGTTGAAGAATTGCTGGGGAATAAACAGGTTTTGGTTCATCAGTCTGTAAATAATGCAAACAAAAGCATAGGTTATGATGATTCAGTTCTATCGAGCCCAAACCACTTGAATAATTCATCATCCACGTATGTGAGTAGCAGCACTACTGAGGAAGAGAGGGATAGCTATTGCAGCGAATTGTTCAACTTCGAAATTCCTCAGAATCTGGACATTAGTGATTTCTTGTAA 969 0.4056 MVRVPCCEKNNGLKKGPWTTEEDVKLINYIQTHGPGKWRNLPKIAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSLMGNKWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHTPRLDLLNMSSILRTVMGNPSLLNLQGLIGAQALMNPELLNLVATASLLASQNNPQQQQQQQLHYNGNYCQTRNQEFSEFQTPTQSNNVDGFMGNLRCSSSLQNSIPTYLDENIVLQQNQVEELLGNKQVLVHQSVNNANKSIGYDDSVLSSPNHLNNSSSTYVSSSTTEEERDSYCSELFNFEIPQNLDISDFL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0482 322 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lal1g0482 322 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lal1g0482 322 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lal1g0482 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lal1g0482 322 PANTHER TRANSCRIPTION FACTOR MYB41 1 317 - -
Lal1g0482 322 Gene3D - 14 67 - -
Lal1g0482 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lal1g0482 322 MobiDBLite consensus disorder prediction 276 295 - -
Lal1g0482 322 Gene3D - 70 117 - -
Lal1g0482 322 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal1g0482 322 CDD SANT 70 113 IPR001005 -
Lal1g0482 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 317 - -
Lal1g0482 322 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lal1g0482 322 SMART sant 14 64 IPR001005 -
Lal1g0482 322 SMART sant 67 115 IPR001005 -
Lal1g0482 322 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0482 Lal-Chr1 3033541 3035294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0482 1 322 MYB Transcription Factor Family AT4G21440 49.153 7.92e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g0482 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0482 K09422 - gmx:102668351 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0482 1 3033541 3035294 Lal2g0441 2 2670367 2671728 LSH
Lal8g0820 8 5879981 5881774 Lal1g0482 1 3033541 3035294 PCT
Lal1g0482 1 3033541 3035294 Lal8g0820 8 5879981 5881774 PCT