Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0480 ATGCATTGGTCTTCCTACTACCAGAATGCTTCTAGGGTCTTTCATAAGTATCCATCTTGGTCCAAAGCAGTTATTGTGTGCACTGTAACAAGTAGCGGAGGTCTAGTTGCATATGGTGATGCTACACCAGTACAAAGTGAAATTGGTAACCAAGTCCGAAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACTAGTTTTCTGAAAAATTTGAATGACCCTTCTTATGAAGTTCATGTGGTTTCACCGCGTAACTATTTTGCATTCACTCCTTTGCTACCAAGTGTTACTTGTGGCACTGTGGAAGCACGCAGCGTCGTTGAACCTATTCGCAGTATCACCCGCAAAAGTGGTGTAAATGCTCAATTTAGTGAAGCCGAATGCTATAAGATCGATCCGAAGATCAACAAAGTTTACTGCCGTGCTGTTCAAGGCAAGAAGGTGGGTAGCGGAGAAGAATTTTCCATTGATTATGATTACCTGGTAATAGCTATGGGAGCCCGTTCTAATACCTTTAACACACCTGGTGTTCTGGAGCATGCTCACTTCCTTAAGGAAGTGGAAGATGCACTAAGAATCCGTCGAACGGTGATCGACCTTTTTGAAAGAGCAAGTCTCCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTGAGTTTTGTAGTAGTTGGTGGTGGTCCAACTGGTGTTGAGTTTGCTGCAGAGCTTCATGACTTTGTACATGAGGATCTATCTAAATTATATCCTTCTCTTGAAAAATATGTGAAGATTACTCTACTCGAGGCAGGCGATCATATCCTAAACATGTTTGACAAGAGAATTACAGATTTTGCTGAATCAAAGTTCTCCAGAGATGGCATTAATGTGAAGTTAGGCTCTATGGTTGTCAGTGTATCCGAAAATGAAATCTCTTCCAAAGAAAGAGCAACTGGTCAAACTGTTTCTCTACCTCATGGAATGGTAGTTTGGTCCACCGGTATCGGTACTCGTCCTGAAATACTTGATTTTATGAAGCAGATTGGCCAGATTAATAGACGTGCATTAGTTACTGATGAATGGCTAAGGTTGGAAGGATTTGACAACATCTATGCTCTAGGTGATTGTGCCACCGTAAATCAGCGGAGAGTTATGGAAGATATAGCCGCAATATTTAGCAAGGCAGACAAGGACAACAACGGAAGGTTAGATCTCAAAGAATTCCGGGAGGTTGTTGGTGACATTATTGAGAGGTACCCCCAAGTAGAAATTTATTTAAAGAAGAACCTAATGAAGGAAGTAGCAGCCTTGCTACAGAAATATGAAGATAGCTCTCTAACAGCGGACATTGAATACTTCAAAGATGCTCTTTCCAAAGTAGATTCTCAGATGAAAAATCTTCCTGCAACAGCTCAAGTAGCTGCTCAACAAGGCGCTTATCTTGCAGAATGTTTCAATCGCATGGAGTTGTGTGAGAAGTATCCTGAAGGCCCTATCAGGTTCAGGGGAGTAGGACGCCATAGGTTTCGCCCCTTCAGGTACAAGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTATGCTTCCAGGAGATTGGATATCAATTGGACATAACTCCCAGTGGCTATGGTATTCAATATATGCAAGCAAACAAGTCAGCTGGAGAACAAGGATGTTGGTGGTAGCTGACTGGTCGAGGCGATTCATATTTGGCAGGGATTCAAGTCGAATCTGA 1728 0.4259 MHWSSYYQNASRVFHKYPSWSKAVIVCTVTSSGGLVAYGDATPVQSEIGNQVRKKKVVVLGTGWAGTSFLKNLNDPSYEVHVVSPRNYFAFTPLLPSVTCGTVEARSVVEPIRSITRKSGVNAQFSEAECYKIDPKINKVYCRAVQGKKVGSGEEFSIDYDYLVIAMGARSNTFNTPGVLEHAHFLKEVEDALRIRRTVIDLFERASLPSLPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVHEDLSKLYPSLEKYVKITLLEAGDHILNMFDKRITDFAESKFSRDGINVKLGSMVVSVSENEISSKERATGQTVSLPHGMVVWSTGIGTRPEILDFMKQIGQINRRALVTDEWLRLEGFDNIYALGDCATVNQRRVMEDIAAIFSKADKDNNGRLDLKEFREVVGDIIERYPQVEIYLKKNLMKEVAALLQKYEDSSLTADIEYFKDALSKVDSQMKNLPATAQVAAQQGAYLAECFNRMELCEKYPEGPIRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAMLPGDWISIGHNSQWLWYSIYASKQVSWRTRMLVVADWSRRFIFGRDSSRI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0480 575 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491
Lal1g0480 575 PANTHER NADH DEHYDROGENASE 75 575 IPR045024 GO:0003954|GO:0006116
Lal1g0480 575 Gene3D - 434 574 - -
Lal1g0480 575 Gene3D - 47 402 - -
Lal1g0480 575 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Lal1g0480 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Lal1g0480 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Lal1g0480 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Lal1g0480 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 349 371 - -
Lal1g0480 575 PANTHER NAD(P)H DEHYDROGENASE B2 75 575 - -
Lal1g0480 575 SUPERFAMILY FAD/NAD(P)-binding domain 214 374 IPR036188 -
Lal1g0480 575 SMART efh_1 381 409 IPR002048 GO:0005509
Lal1g0480 575 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Lal1g0480 575 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Lal1g0480 575 SUPERFAMILY EF-hand 374 461 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0480 Lal-Chr1 3021222 3025188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0480 5 575 Chloroplast and Mitochondria Gene Families AT4G21490 69.896 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0480 K03885 - gmx:100820044 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0480 1 3021222 3025188 Lal2g0446 2 2699032 2710337 LSH