Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0466 ATGGTTGACGCCTTTTTAAGGCTTAAATTCGATATGCTCAGGCATTTGCAAGAGAACATTCTTTTAATAACAAGAAAAATGGCCATGGATCAGTACTTTGAGGAAGCTGTGCCTGAAATCGGTTCCTTTGAAGATAAACCATATTCGGGAAAGTGGAAATCTTCCAATGATATCATTGCAGATTCTGATAGAAATGCATCTGGTGGCTTTGACTGCAACATCTGCTTGGAGTGTGTGGAAGATCCAGTGGTCACTCTTTGTGGTCATCTATACTGCTGGCCTTGCATCTATAAATGGCTCTCTTCCGAAACAGAAGAGCAGCAGAAGTCACAATGTCCAGTATGCAAATCAGAAGTTTCTCGATCCTCCCTAGTTCCGTTGTATTGCCACGGCCAAACTAGAAGAGCTTCTGAAGGAAAGGGTCATGAAGTAGGGACAGTCATACCGCCAAGACCTCCAGCTCCAAGTTCTTATAATACTACATTTACTTCCCGTCCTACTTCTCAAAGCTATCATCGTCATCATCCTTATCATCCTCATTATCCTCAACAATTCAACTCAATTCCGACCAGTTACACTTCACCGATGCTTAGCACAAGTAGTTTGCAAGACATGCCATTTGGACTCTTTGGTGGTATGATATATGCTAGGGTCTTTGGTAACCAGGTGACAGACATTTTTGCATATCCCAATTCTTATGATAACTCAGGGAACAGTAACCCAAGGATCAGAAGTCATTTGATGGAATTTGATAAATCACTGAGTAGAATCTGTTATTTCCTCCTCTGCTTCCTAGTTTTTTGCCTTCTCATGTTCTGA 819 0.4151 MVDAFLRLKFDMLRHLQENILLITRKMAMDQYFEEAVPEIGSFEDKPYSGKWKSSNDIIADSDRNASGGFDCNICLECVEDPVVTLCGHLYCWPCIYKWLSSETEEQQKSQCPVCKSEVSRSSLVPLYCHGQTRRASEGKGHEVGTVIPPRPPAPSSYNTTFTSRPTSQSYHRHHPYHPHYPQQFNSIPTSYTSPMLSTSSLQDMPFGLFGGMIYARVFGNQVTDIFAYPNSYDNSGNSNPRIRSHLMEFDKSLSRICYFLLCFLVFCLLMF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0466 272 SMART ring_2 72 115 IPR001841 -
Lal1g0466 272 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Lal1g0466 272 Pfam Zinc finger, C3HC4 type (RING finger) 72 115 IPR018957 GO:0046872
Lal1g0466 272 ProSiteProfiles Zinc finger RING-type profile. 72 116 IPR001841 -
Lal1g0466 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 29 272 - -
Lal1g0466 272 MobiDBLite consensus disorder prediction 136 165 - -
Lal1g0466 272 CDD RING-HC_AtRMA_like 70 117 - -
Lal1g0466 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 29 272 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal1g0466 272 SUPERFAMILY RING/U-box 69 129 - -
Lal1g0466 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0466 Lal-Chr1 2931402 2932746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0466 65 272 C3H Transcription Factor Family AT4G28270 33.486 1.81e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0466 K10666 - gmx:100780643 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0466 1 2931402 2932746 Lal1g0466 1 2931402 2932746 ECH