Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0462 ATGGGTTGTATATGTTCAAGGAGTTCAGCTGTGGAAGACAGTCCGGAAGGTATCGTAAATAAATTATCATCGTCTAGCACAAGGACCTTAGAGTTGAGTTCTTCGCAATTGAATTCCAGAATAAAGGTTGAGACGGTTAGGATGAAAGATATGTTACTAGATAGTCATAGTAGTGATGTGAAAGTTTCATTAGTTAACAAGAAAGGCAATGGTTCAATGAAATTGTATGATGATGAAAATGGAATGAGTAGAATAGAGATACCTGAATTGGCTGCTATTGATCGTCCTAGTTTTGGAAGGGTTCCAAAGGCCGTTGAGGGAGAGCAAGTTGCAGCTGGATGGCCGTATTGGCTTTCTTCTGTTGCCAGTGAAGCTATCAAGGGATGGATACCACGGAGTGCAAACACTTTTGAGCGGTTACATAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCACACGATTTGACTAACCAAAAGATTGTTGCTTTGAAGAGGGTACGCTTTCATAATCAAGATCCTGAGAGTGTCAAATTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATAATAAAGTTGGAGGGCTTGATAACATCATCAATGTCTCACAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTTCATCAAATCCTGCCATTAAGTTCTCTGAACCTCAGCTGAAATGCTATATGCAGCAACTTCTTAGTGGACTGGATCATTGCCACAGTCATGGTGTCCTCCACCGTGACATAAAAGGCTCAAATCTTCTCATTGACAATAACGGTGTCTTGAAAATTGCGGATTTTGGTTTGGCAAGTCATTTTGACCCCCATCACAGTGTTCCATTGACAAGCCGTGTAGTAACTCTGTGGTATAGACCACCTGAACTTTTACTCGGAGCAAATCATTATGGAGTTGCAGTGGATTTGTGGAGCGCTGGTTGCATACTGGGTGAACTATACACAGGCAGACCCATATTGCCAGGAAAAACAGAGGTTGAACAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGAGGATTATTGGCTTAAATTGCGGTTGCCACGTTTAACTATTTTCAAGCCTGCAAACAATTATAAACGGTGTGTTGCGGAAGCATTCAGGGAATATCCATCTCCAGCTGTTAGGCTTATAGCGACCCTCCTTTCTGTAGATCCTGCACATCGAGGGACAGCAGCTGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAGCCCATGGCTTGTGATCCATCAAGTTTACCAAAATACCCTCCCAGCAAAGAGATCGACACCAGATTGCAGAATGAAGCAACCAAAAGGGAAAGTGCTGTTAGAGGTAAAGAGCAAAAAGTTGGGTCAGGAGTTAGACAAGAAAAAGGACCTAGGGCACATGTCACACCAGCTGACCCAGGCATGTTAACACAGCAAAACCAACGTTATTCCACCCCAAAGAACCGAAGTGAATTGCGGAACCAATCTGGATTTCTGGTTTTCCCTCCACACAAACACTCAGAAGATGTTAAAGAAATGGGAAATAATTTATCTGGGCGTCTCCGTAAGAGGCCTTCACATTCAGGTCCATTGGTTCCTGGTTATAGATGGGCAAAGAGTGGGAAGGAAGTTGATGATGGGGATCCTGTTTCAAACAGAGTGAATCTATCAAAACTATATGGCCTAACAGCGTCTAGGCCTATGCCTTCTCAAGATGAAGAAAAAAAGCCAGTTCAGTTGCACCACGGAAAACCAATTGAAGTAATAAAATCCGTGGAGTCAACTAGTGGATCAGATTCAAGAAGGCAGGACCAACAAAGGATTGTTGATCTCCCTCAAATTGAAAATGGAAGAGTTCCTAGTGAAAAATTAACTCCGGACAAGAATGTGGTTAGGAAAAACAAGATATATATGTCAGGACCATTACTAGTTCAATCCAACAATATGGATGTGATGTTGAAAGAGCATGAAAGAAAGATACAAGAGTTTTCAAGAAAAGCAATAATTGACAAGGCAAGAGCAAGAAGTGACAAACTTAATGCACAGCAAAAGTAG 2085 0.4173 MGCICSRSSAVEDSPEGIVNKLSSSSTRTLELSSSQLNSRIKVETVRMKDMLLDSHSSDVKVSLVNKKGNGSMKLYDDENGMSRIEIPELAAIDRPSFGRVPKAVEGEQVAAGWPYWLSSVASEAIKGWIPRSANTFERLHKIGQGTYSTVYKAHDLTNQKIVALKRVRFHNQDPESVKFMAREIHVLRRLDHPNIIKLEGLITSSMSHSLYLVFEYMEHDLTGLSSNPAIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASHFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSAGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPRLTIFKPANNYKRCVAEAFREYPSPAVRLIATLLSVDPAHRGTAAAALKSEFFTSEPMACDPSSLPKYPPSKEIDTRLQNEATKRESAVRGKEQKVGSGVRQEKGPRAHVTPADPGMLTQQNQRYSTPKNRSELRNQSGFLVFPPHKHSEDVKEMGNNLSGRLRKRPSHSGPLVPGYRWAKSGKEVDDGDPVSNRVNLSKLYGLTASRPMPSQDEEKKPVQLHHGKPIEVIKSVESTSGSDSRRQDQQRIVDLPQIENGRVPSEKLTPDKNVVRKNKIYMSGPLLVQSNNMDVMLKEHERKIQEFSRKAIIDKARARSDKLNAQQK 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0462 694 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
Lal1g0462 694 PANTHER CYCLIN-DEPENDENT KINASE 42 681 - -
Lal1g0462 694 MobiDBLite consensus disorder prediction 449 470 - -
Lal1g0462 694 MobiDBLite consensus disorder prediction 579 594 - -
Lal1g0462 694 Gene3D Transferase(Phosphotransferase) domain 1 220 460 - -
Lal1g0462 694 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0462 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Lal1g0462 694 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Lal1g0462 694 CDD STKc_CDK9_like 137 421 - -
Lal1g0462 694 MobiDBLite consensus disorder prediction 449 499 - -
Lal1g0462 694 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0462 694 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0462 694 SUPERFAMILY Protein kinase-like (PK-like) 130 427 IPR011009 -
Lal1g0462 694 PANTHER CELL DIVISION PROTEIN KINASE 42 681 - -
Lal1g0462 694 MobiDBLite consensus disorder prediction 483 499 - -
Lal1g0462 694 MobiDBLite consensus disorder prediction 528 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0462 Lal-Chr1 2900089 2906907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0462 129 462 Core Cell Cycle Gene Families AT5G10270 48.718 7.55e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal1g0462 Pkinase 3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0462 - - gmx:100807590 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0462 1 2900089 2906907 Lal1g0462 1 2900089 2906907 ECH
Lal10g0689 10 14686436 14692604 Lal1g0462 1 2900089 2906907 PCT
Lal8g0777 8 5574369 5578510 Lal1g0462 1 2900089 2906907 PCT
Lal1g0462 1 2900089 2906907 Lal10g0689 10 14686436 14692604 PCT
Lal1g0462 1 2900089 2906907 Lal8g0777 8 5574369 5578510 PCT