Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0460 ATGACAAATTTAAATGTTTGTATAGTACTGAGGAAACAACAAACAAAAAAGGCATTGTTGAAGAAAAACAGAATCACGATGTCACTGCACGCTTTCAAGGAAAGTCTAAAACCTTGCAACAAAACCCAACAACAACCATCCTCCAATTCATTTCTTATTGATTCCCATTTCCCAACTGAAATCCGTAGAATACCCCCAAAATCCTCTCTTTCCGAGCAGATTCGCCGTCTTCAGGATTCCCCTCTTTCAATTTCTCCACCGCCGCGGCCTCAGAGGGACGCCAAATGCGGCGAGGGTAACAATGATGAAGAAAATCTGGTGGTAAAGAAACCAAATTTGGGCCCACCTAAACTAACCCCATTTCAGTTTGATCACACTGGACCCTTTCAGCCTTTGCTCTTGTCTTCACATGGAGAAATTCCGGTTTCCCAGGTTCCTCCATCTATTAACTGTAGACTGCTTGAGCATCAAAGAGTGGGAGTGAAGTTTATGTATGGTTTGTACAAGAACAATCATGGAGGCATCCTTGGCGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATCTTTGGTAAAGATGGGGAGTCTATGCTCAGTGGAAATTGGGAAAATAAGAGAGACCCTGTATTAATAATTTGTCCGACTTCTGTTATTCATAACTGGGAGAGTGAATTCTCTAAGTGGTCTAACTTCAGTATTTCCATCTATCATGGTGCAAACCGGGATCTGATATATGATAAATTGCAAGCAGATGGAGTGGAGATACTTATTACCAGTTTTGACACTTTCAGGATTCATGGTAGTTCCTTGTTAGATATCAAATGGAACGTTGTGATTGTTGATGAGGCTCACCGCCTTAAGAATGAGAAATCAAAACTCTACAAAGCATGTTTAGAAATTAAAACCCCAAGACGCTATGGTCTTACTGGGACTGTAATGCAGAATAAGATCATGGAATTGTTTAATATCTTTGACTGGGTTGCACCCGGATCCCTCGGAACCCGGGAACACTTTCGTGATTTCTATGATGAACCCCTTAAGCATGGTCAGAGATCAAGTGCTCCTGATAAGTTTGTCCAAATTGCTGATGAGAGAAAACAACACCTTGTGACAGTTCTTCGTAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATGTGCAAAAACGTGTGTACAGAAGAATGTTGCAACTTCCTGAAATTCAATGCCTTATAAATAAGGACATGGATTGTAGCTGCGGTAGCCCTCTTAAACAAGTTGAATGTTGTAAGAGGATAGTACCAGATGGAATTATCTGGACTTACCTTCACAAAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTGCCATGCCTCGTCAAGCTCCAACAGATAAGTAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGATCCTGACAAACAAAATAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTGATGGGTGGGAACACCCAGAATGAAAGTTTCATGGGTCTAAGTGATGTGAAGCATTGTGGCAAAATGCGAGCACTTGAAAAATTATTGTTCTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGATCCACTCCAACTAATTTACGGCAGTTTCTTGTTGATGATTTCAACAAGAGTCCAAGCAAACAAGTTTTCTTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTAAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAAGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTTGTGGTGTTCCGTTTTCTTGCAGCCGGTTCACTTGAAGAACTTGTTTATACTCGCCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTTTCTGGAAATATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTAGAGATTTATCCGATAAGCTATTTACTAGTGAGATCATTGAAATGCACGAGGTGCATAAAACAAAACAACAAGGAAGTATAAATCTGCCAGAAGAAACATGTTCATTAGTATCAGAGTCTGATACCAGGTTATGTACTCAACCTGTGAGGGTTGCTACAAGTAAACCAGAACTTGAAGATCTTGGCATTGTGTATGCTCATCGAAATGAAGACGTTGTCAACTTCGGACCTGGGACACAAGAGAAGATAGATACCAGCATCCGTTCCGGCGATAGCCTAAGCATGCCAAGCATCTCTTCAGTTCCACAAAGAAAGAAACCAGATTGTGTTCCTAAAAAGCAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGGCACATTGCCCAGTCCATGGGCATGGGAGAGCTTGCATTTAGCAAATGGTTACTATCTGCAACTCCATTGGAGAGAGAAAAAGTGCTTCAAGACTACAAGAAGAAAAAGAAGATTCTCAATGGTTGA 2664 0.4122 MTNLNVCIVLRKQQTKKALLKKNRITMSLHAFKESLKPCNKTQQQPSSNSFLIDSHFPTEIRRIPPKSSLSEQIRRLQDSPLSISPPPRPQRDAKCGEGNNDEENLVVKKPNLGPPKLTPFQFDHTGPFQPLLLSSHGEIPVSQVPPSINCRLLEHQRVGVKFMYGLYKNNHGGILGDDMGLGKTIQTIAFLAAIFGKDGESMLSGNWENKRDPVLIICPTSVIHNWESEFSKWSNFSISIYHGANRDLIYDKLQADGVEILITSFDTFRIHGSSLLDIKWNVVIVDEAHRLKNEKSKLYKACLEIKTPRRYGLTGTVMQNKIMELFNIFDWVAPGSLGTREHFRDFYDEPLKHGQRSSAPDKFVQIADERKQHLVTVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRVYRRMLQLPEIQCLINKDMDCSCGSPLKQVECCKRIVPDGIIWTYLHKDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQNKDAEFAAAVFGPDIDLMGGNTQNESFMGLSDVKHCGKMRALEKLLFSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQFLVDDFNKSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRFLAAGSLEELVYTRQVYKQQLSNIAVSGNMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIEMHEVHKTKQQGSINLPEETCSLVSESDTRLCTQPVRVATSKPELEDLGIVYAHRNEDVVNFGPGTQEKIDTSIRSGDSLSMPSISSVPQRKKPDCVPKKQKVPLIDERKRTQYRHIAQSMGMGELAFSKWLLSATPLEREKVLQDYKKKKKILNG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0460 887 MobiDBLite consensus disorder prediction 794 831 - -
Lal1g0460 887 MobiDBLite consensus disorder prediction 63 113 - -
Lal1g0460 887 Pfam SNF2-related domain 169 427 IPR000330 GO:0005524|GO:0140658
Lal1g0460 887 MobiDBLite consensus disorder prediction 37 56 - -
Lal1g0460 887 Gene3D - 133 385 IPR038718 -
Lal1g0460 887 PANTHER SNF2/RAD54 FAMILY MEMBER 32 876 - -
Lal1g0460 887 CDD SF2_C_SNF 536 665 - -
Lal1g0460 887 MobiDBLite consensus disorder prediction 797 819 - -
Lal1g0460 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 386 IPR027417 -
Lal1g0460 887 MobiDBLite consensus disorder prediction 37 55 - -
Lal1g0460 887 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 698 IPR001650 -
Lal1g0460 887 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 336 IPR014001 -
Lal1g0460 887 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 32 876 - -
Lal1g0460 887 SMART helicmild6 571 654 IPR001650 -
Lal1g0460 887 SMART ultradead3 149 344 IPR014001 -
Lal1g0460 887 Gene3D - 398 742 IPR027417 -
Lal1g0460 887 Pfam Helicase conserved C-terminal domain 542 654 IPR001650 -
Lal1g0460 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 707 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0460 Lal-Chr1 2885182 2893342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0460 611 697 RAD5 or RAD16-like Gene Family AT3G16600 40.230 1.99e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal1g0460 SNF2_N 7.1e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0460 K20098 - gmx:100781003 1390.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0460 1 2885182 2893342 Lal1g0460 1 2885182 2893342 ECH