Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0459 ATGGTGTGTTTGGGTTATGAAATGGTTGAAAGGTTGGAACTTTGGTTGGTTAAAGGGAGAATTGCATTTGGGTGGTGTGTTTTTCTGTTGTTTCTTAGTCCAGTGGTAGGTTTGAGACCCTTGAGGGACAAAACTGGTTCACGGGGTGATGAGTGGCTTTTTTCAAGAAGAGACGAAAGTGACTCAGGTCCATTTTCCGAATGGAACATAACCGGAACATATAGAGGGAGTTGGAAATTTCTAGATACCACAAATGGCTCTTCCAAATTTTCAGATATCAGACAAACAAATGGGAGTTCTGTAATTGAGTTGGCTAGTACTCCCACAAAGATTACTGGTGTTCATTATGTACAGGGGGTAGTTTTGTTCCATGACGTGTTTGACAAAGAATACAGCGTTGGTGGATCCCAAATCAGAATAGAAGGTGTATATATATGGCCTTTTAGGCAGCTTCGAATGATAGCCAGCAGTAGAAAAGAGGGAGGGTTGAATCAGGGTGATGATTATCTTTTATCTAATCCATATCATATGCTTGGAGTTTTCTCATCTCAAGTATTGCAAGAACCTTCACGAGATAGGATGTCGAGAAGAAAATCTTCTCCATTGCATGATATGGAAAAACATTGTAATGCTGAAATTGCTGCACAGGTTTCACGCTTGCCATCATCAAAACATGGAGAGGGGCACGATTCTTTTCACTTGGAGGGGTTAATGGAGAGCCCATCGGTGGATGATGATGGAGAGTGCTTCTCTCCTTTACAGTTAAATGCATCATCTGTTAACGTGGAAGCTTACTATAGTAAAGCAGTGAACTACACATTGATGGTTACTTTTGTCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAGATGGAGCACAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATATTAATGGTTGGTCAGCAAGCTATAATTGATGTTTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAAACGTTGTTTAATGCCTTTGCAACGGCTGCATTCTTTAAATTTGTGGTTTTCTCAATATTTGAGATGAGATATATTCTTGCCATCTGGAAGGCAAATAGGCCTTTGAGTAACGGGGAAGGTTGGGAGACAATGAGGCGTGAGCTTTCATCTTTATACAGGCGCTTATCTGGGATCCTCTTCGCAGGCATTCTGCTCATGTACGAATTCCATTATTATTTGAAACCTATTCTTCTTCTTGTATACTCCTTCTGGATACCTCAGATAATCACCAATGTTGTTCGCGATTCACGCAAGCCATTGCATCCTCAATATATCATAGGCATGACCGTTACTCGGCTAGCAATACCATTATATATTTTCTGTTGTCCTGACAACTTCATGCGGATAGTAGCAGACCAGAGGTGGTGTGTCTATCTGACTGTATTTATTGGACTTCAAGCTGCAATTCTTCTACTTCAGCACTACCTTGGGTCCCGGTGCTTCATTCCTCGCCAGATTCTACCTGAGAAATACAACTATTACAGGAGGTTTGCTCAAGATACAAGTCATGCTGAAGATTGTGTTATTTGCATGACAGCCATTGATCTTAATCATCCATCTAATGATTGCATGGTGACACCATGTGATCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCGACTTGTCGGCGGCCGCTTCCACCGGCCTGA 1704 0.4167 MVCLGYEMVERLELWLVKGRIAFGWCVFLLFLSPVVGLRPLRDKTGSRGDEWLFSRRDESDSGPFSEWNITGTYRGSWKFLDTTNGSSKFSDIRQTNGSSVIELASTPTKITGVHYVQGVVLFHDVFDKEYSVGGSQIRIEGVYIWPFRQLRMIASSRKEGGLNQGDDYLLSNPYHMLGVFSSQVLQEPSRDRMSRRKSSPLHDMEKHCNAEIAAQVSRLPSSKHGEGHDSFHLEGLMESPSVDDDGECFSPLQLNASSVNVEAYYSKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMVGQQAIIDVYLCLLHLTAGILVETLFNAFATAAFFKFVVFSIFEMRYILAIWKANRPLSNGEGWETMRRELSSLYRRLSGILFAGILLMYEFHYYLKPILLLVYSFWIPQIITNVVRDSRKPLHPQYIIGMTVTRLAIPLYIFCCPDNFMRIVADQRWCVYLTVFIGLQAAILLLQHYLGSRCFIPRQILPEKYNYYRRFAQDTSHAEDCVICMTAIDLNHPSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0459 567 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 20 567 - -
Lal1g0459 567 Pfam Ring finger domain 516 561 IPR001841 -
Lal1g0459 567 SMART ring_2 517 560 IPR001841 -
Lal1g0459 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 567 IPR013083 -
Lal1g0459 567 PANTHER RING ZINC FINGER PROTEIN 20 567 - -
Lal1g0459 567 SMART ringv_2 516 561 IPR011016 GO:0008270
Lal1g0459 567 SUPERFAMILY RING/U-box 499 566 - -
Lal1g0459 567 ProSiteProfiles Zinc finger RING-type profile. 517 561 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0459 Lal-Chr1 2874179 2884088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0459 506 561 C3H Transcription Factor Family AT3G58720 37.500 1.51e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0459 K23788 - gmx:100802452 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0459 1 2874179 2884088 Lal1g0459 1 2874179 2884088 ECH