Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0458 ATGAGCAGTGTGTGTGGTGAGCAACACAAGTTTCAATCCTCCCACCAACTTTTATCCCTTAAGAAATCCCTCAGAGATATTGACATCCCACCAAGGAAGCGCCTCACTCGCCGTGCCACTGTCACACATGACGGCGCTTCCGACATGTTTTCTGACGATACCCTTTTCCAAAAGTACCTTCCTCACAACAACATGAACATGGTTGATGAATCTGATAACGATTCTGACCCTTACTCATCGGATCATTTCCGCATGTACGATTTCAAGGTGCGGAAGTGCAGCCGCGGCCGCAGCCATGACTGGACTGACTGCCCTTTTTCTCATCCCGGCGAGAAAGCTCGCCGGCGGGACCCCAGACTGTACCACTATTCTAGTACAGTCTGTCCTGAGTATCGCCGTGGCTGCGGATCATGCAGCCGCGGCGAAGCATGTGAGTTCTCTCACGGGGTTTTTGAGTGCTGGTTGCACCCTGCTAAGTATAGAACTGAAGCTTGCAAAGATGGCAAGAATTGCAAGCGAAAAGTGTGCTTCTTTGCACACACACCTCGCCAACTTAGGGTTCTACCTGTAAATTTACACCCTACTTCAAATGAAATCATTAACTCATGCGACAATAATAACAAGGGCAAGTTCTTGAACCATTCAGACATTAAACACTCTTGTTTATTTTCTCATTATAATTCTTGTGGTTCTAATTGTTCACCGACTTCTACTTTGTTTGGCATGTCTCATTTTTCTTCTCCACCAATCTCACCCTCTGCTTCTCCTGCAAATAGGGTCTCACCCATGTCTAGGTTTGTTGGATCTGAGAAAAACCATCATGATAGTGCTGGTTTGGTTAGTTATAAAGACATGCTCAATGAGCTTATGTGTTCATTGGAGGGTTTTAATGTTGCTGATGTAAATTCTAATTATAATTCTCCTGTTTCTTCTTCTTCTTCTTCTTTTAAAGTACAGAAGAAGAATTTGAATTGGCTTGATGCTTCCTTCAACTGTGAGGATCAGCATTTTGCTCTTTCTCCTTCTACAATTGAAAGCTTCCCATCGAGTGGTAGATATTCAACCAGCAATTATTATAAGAATGAGGCAAAGGTTGTTGATGATGTAAATGACCCGGATCTCGGGTGGGTGAATGAATTGCTCAGGTAG 1149 0.4395 MSSVCGEQHKFQSSHQLLSLKKSLRDIDIPPRKRLTRRATVTHDGASDMFSDDTLFQKYLPHNNMNMVDESDNDSDPYSSDHFRMYDFKVRKCSRGRSHDWTDCPFSHPGEKARRRDPRLYHYSSTVCPEYRRGCGSCSRGEACEFSHGVFECWLHPAKYRTEACKDGKNCKRKVCFFAHTPRQLRVLPVNLHPTSNEIINSCDNNNKGKFLNHSDIKHSCLFSHYNSCGSNCSPTSTLFGMSHFSSPPISPSASPANRVSPMSRFVGSEKNHHDSAGLVSYKDMLNELMCSLEGFNVADVNSNYNSPVSSSSSSFKVQKKNLNWLDASFNCEDQHFALSPSTIESFPSSGRYSTSNYYKNEAKVVDDVNDPDLGWVNELLR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0458 382 ProSiteProfiles Zinc finger C3H1-type profile. 123 151 IPR000571 GO:0046872
Lal1g0458 382 SMART c3hfinal6 122 150 IPR000571 GO:0046872
Lal1g0458 382 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Lal1g0458 382 Gene3D - 86 150 - -
Lal1g0458 382 PANTHER UNKEMPT FAMILY MEMBER 26 381 IPR045234 -
Lal1g0458 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0458 Lal-Chr1 2872085 2873233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0458 72 188 C2H2 Transcription Factor Family AT5G12850 61.538 1.95e-49 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal1g0458 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0458 K23047 - gmx:100787049 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0458 1 2872085 2873233 Lal1g0458 1 2872085 2873233 ECH