Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0452 ATGCTTGCAGTGTCACCTCTAAGAAACATCAATGAAAACCAAGGAGAGATTGAGAGTTTTTCGCTGGGAACCTCAACGGACGTTAACTTTGGTGACCTTTCAGATGGGAACTTATTGGAAAGTATCAACTTCGATGACATCTTCGTTGGCATCAACGTCGACGGTGATATCTTGCCGGATTTGGAGATGGACCCTTGCATGTTTTCCGAGTTCTCCATTAGCGGCGGCGATGAGTCGGAGATGACCTCATCGGTTGAAAACACCAAGGCTGATAATAATTATCAGAATAGTACTATAAATATTACATCAAAGAAACTAGAAGATGAAGAAAAAACAACTTCTTCAGCTTCAGGTCAGGGTGAGGAGATAGTGAGCAAAAGAGATGAGTCTGTAGTGGTGAATAAGTCCCCAAAGGATGGTGTAAAAGGGAAGAAATCATCATCCAAATCAAAGAATAATCCTCAAGGGAAGAGAAAGGTGAAGGTTGATTGGACACCAGAGTTGCACAGGCGATTCGTGCAAGCAGTGGAACATCTAGGAGTAGATAAGGCAGTTCCTTCAAGGATTTTGGAGATTATGGGAATTCATTGTCTCACTCGCCATAACATTGCCAGCCACCTTCAAAAATATAGATCACATAGGAAACATATGCTAGCGCGTGAAGCTGAAGCAGCAAGCTGGAGTCATAGGAGACAATTATATGGTGCAGCTGGCGCATGTAGAGGAGGAGGGAAGGGTGAAGTGAGCCCATGGGTTGCACCAACCATGGGTTTCCCTCCCATGAACCCAATGCCCCATTTTAGACCTTTACATGTATGGGGGCATCCCCCTATGGACCACTCCTTTATTCACATGTGGCCTAAACATCTACCACCCTCGCCGTCACCGCACCCATGGACGGCTCCTGCACCACCTCCAGATCCTTCGTTTTGGCATATTCAGCACCAGCGGGCTCCAAACACACTGACACAAGGAACACCGTATTTCCCACAACCTCTGACAAGAACGATTTTTGGATCTCCACGTGTCCCTGCCATAGCACCTCATGTGTACAAAGCAGATCCCAGCATTGGTGTAACTTGCCCCTCTCTTCTCTTCGACTTCCATCCGTCAAAGGAGAGCATAGATGCAGCTATTGGAGATGTTATAACAAAACCATGGCTACCACTGCCTCTTGGACTAAAAGCTCCAGCACTTGATAGTGTGTTGGGTGAATTACAGAGACAAGGAGTTCCAAATATTCCACCATCTTCTTCTTGA 1260 0.4603 MLAVSPLRNINENQGEIESFSLGTSTDVNFGDLSDGNLLESINFDDIFVGINVDGDILPDLEMDPCMFSEFSISGGDESEMTSSVENTKADNNYQNSTINITSKKLEDEEKTTSSASGQGEEIVSKRDESVVVNKSPKDGVKGKKSSSKSKNNPQGKRKVKVDWTPELHRRFVQAVEHLGVDKAVPSRILEIMGIHCLTRHNIASHLQKYRSHRKHMLAREAEAASWSHRRQLYGAAGACRGGGKGEVSPWVAPTMGFPPMNPMPHFRPLHVWGHPPMDHSFIHMWPKHLPPSPSPHPWTAPAPPPDPSFWHIQHQRAPNTLTQGTPYFPQPLTRTIFGSPRVPAIAPHVYKADPSIGVTCPSLLFDFHPSKESIDAAIGDVITKPWLPLPLGLKAPALDSVLGELQRQGVPNIPPSSS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0452 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 215 IPR017930 -
Lal1g0452 419 Pfam Myb-like DNA-binding domain 162 211 IPR001005 -
Lal1g0452 419 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 418 - -
Lal1g0452 419 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 159 213 IPR006447 GO:0003677
Lal1g0452 419 Gene3D - 156 217 - -
Lal1g0452 419 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 418 IPR044825 GO:0003700|GO:0045893
Lal1g0452 419 SUPERFAMILY Homeodomain-like 157 216 IPR009057 -
Lal1g0452 419 MobiDBLite consensus disorder prediction 72 161 - -
Lal1g0452 419 MobiDBLite consensus disorder prediction 122 146 - -
Lal1g0452 419 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0452 Lal-Chr1 2834504 2839932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0452 1 295 G2-like Transcription Factor Family AT5G44190 44.625 1.06e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal1g0452 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0452 - - gmx:100799248 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0452 1 2834504 2839932 Lal1g0452 1 2834504 2839932 ECH