Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0449 ATGATGCTAGAAAAGATGGATGATGGAGAAGTTTCAAATGGTTTCCCTCTTAACCCGGCAACTGGTTCATCTAATAATTCTGATCCTGTTTTGAAGAGGAAGAGAAACCTCCCTGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACACTAATGGCAACGAATAGGTTCTTATGTGAAACATGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTGCATAGACGTGGACACAACCTACCTTGGAAGCTAAAGCAGAGAACAAGCAAAGAAGTGAGGAAGCGAGTTTATGTGTGCCCAGAGAAAACTTGTGTCCACCATAACCCCGCAAGGGCTTTGGGAGACTTAACTGGGATAAAAAAACACTTTTGCAGAAAGCATGGGGAGAAGAAATGGAAGTGTGATAAGTGCTCAAAGTGTTATGCAGTTCAGTCTGATTGGAAAGCACACTCAAAAACTTGTGGTACTAAAGAATACAAATGTGATTGTGGAACTATCTTTTCAAGGAGGGATAGCTTCATTACTCATAGGGCTTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAACATCAAACATAAGCAACTCACTAGGCCCTAACTTTAGTTACAACATCATGGGAACTCCCCAAGGCCCTAACATGGCAACCCATTTTTCTTCAATTTGCAAGCCAGTTTCAAGCATTGATCATGAAACTAGTAATCAAACCAGTAGAGATCTATCCCTTTGGATGGACCAACTATCTCATCATGCTCATGAAACAAAGGTCAATGAAAATATTCATCAACTTGGGTCAGCTCCAAACTCAGGATCAGCAATATATGGTGAAAACCCATTTAGTCAATGCTCAAATAATCATTCACCCTCTAATAATTATCACCTAAATTGGGTTTTTGGAACTAAGCCTCCCTCTAACAGTACCATTGAGCTTATAACTAGCACTACTACTTCACTTCCACTAGGCAATATTATTAAGGATGCTACATGTACAAGCCAGCTTATGAGTGTTCCTTCCTTGTATAGCTCCCAACACCAATCCCACCAAACATCCTCAGCAACAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGTGCAACCTCAACTACTGACCCATCATTCCTTGGGAGCTTAGGTTTGAAATGCAGTAACAATCAAGGTCAAGATGGGGACAAGATCTTCCTGACGTATGGTTCAAGTTCAGTACCCACTAGTTTTGGAAGTGAGGCAGAAAACTCAGCATGTGACTTGTCACAAATGCACCCTGCAAAACGTAGACATGTACATAATGAGGAAAGTCCTGGTGGGGGGCAAACTAGGGATTTTCTTGGTGTTGGGGTGCAAACCATATGCCACCCTTCATCAATCAACGGATGGATGTGA 1416 0.4202 MMLEKMDDGEVSNGFPLNPATGSSNNSDPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKCYAVQSDWKAHSKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALAEETARVNATSNISNSLGPNFSYNIMGTPQGPNMATHFSSICKPVSSIDHETSNQTSRDLSLWMDQLSHHAHETKVNENIHQLGSAPNSGSAIYGENPFSQCSNNHSPSNNYHLNWVFGTKPPSNSTIELITSTTTSLPLGNIIKDATCTSQLMSVPSLYSSQHQSHQTSSATNMSATALLQKAAQIGATSTTDPSFLGSLGLKCSNNQGQDGDKIFLTYGSSSVPTSFGSEAENSACDLSQMHPAKRRHVHNEESPGGGQTRDFLGVGVQTICHPSSINGWM 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0449 471 MobiDBLite consensus disorder prediction 16 31 - -
Lal1g0449 471 Gene3D Classic Zinc Finger 40 113 - -
Lal1g0449 471 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 468 - -
Lal1g0449 471 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lal1g0449 471 Gene3D Classic Zinc Finger 115 195 - -
Lal1g0449 471 PANTHER F-BOX ASSOCIATED PROTEIN 8 468 - -
Lal1g0449 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lal1g0449 471 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lal1g0449 471 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0449 Lal-Chr1 2812332 2815484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0449 29 471 IDZ Gene Family AT1G03840 53.226 3.35e-151 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g0449 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0449 K25870 - qsu:112011855 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0449 1 2812332 2815484 Lal1g0449 1 2812332 2815484 ECH