Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0443 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTAGAGGAGCTTTTGGAGCTGCTATTCTTGTTCATCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATTAGGCTTGCAAGGCAAACTGAAAAATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATCCAGCACCCTTATATTCTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGATATTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAGATCAAATGGTGCTTACTTTCCTGAAGAGAAACTATGCAAATGGTTCACTCAAATACTCTTAGCAGTGGAATACCTGCATTCAAATTATGTGTTGCATCGTGACCTAAAGTGTTCTAACATCTTTCTTACTAAGGATCAGGATGTTCGCTTGGGGGATTTTGGGCTCGCAAAGACTCTGAAAGCAGATGATCTGGCTTCTTCAGTAGTAGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTTAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCATGCTTTTAAAGCTTTTGATATGGCAGGACTGATAAGCAAGATAAATCGTTCCTCTATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAATACTGATAAAGAGCATGTTGAGAAAAAATCCTGAGCATCGACCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAACCCTATGTTGAACAATATCGACCATCTTTCAATCCTCCTCCAATATCCTGTTCTCCTGAAAAACCAATTTCTTCTGTATATCGTTCTAGAAAAAATATGGTTGAAAGTCAAAACAGTAATAGTTCAAGTAGTGACAAAGATAGCTTGATGTCAAATGAGAGAGACATTGCCACAGCAGTGCCCAAGTGTGATAACAAAGGCACTGACACAGATATGACATCAATAGACGATGATGGCTCAGAGCATCTCCTGCCTTGTGAGCAAGAAAGTCACTCTAGCAATGCGAATACCAAAACAGTTGAACAAGACTTGAAGAAACCATCTCATAGTGAACAGTGTTCGAATGTTGAATCTAAGCAGCCAAAAACAGTTAGGAATTTAATGGTCGTATTAAAAGAGGGAAAGGTTAGAGAAACAAATTCTCCAATGAGAGGTAGTCGCGTAAAGGCTAGTGGTGTACCAACACCGAAAATAAATACAGAGACATTGTCCAGATTGCCTAAGCCTATTTTTGGTTCTCCCAGTTTGAAGCCTAATTTAGAGCCACCAACTGCTGCACTTGCAAGGGCAACCCCTCATTCTGTAAAGCGAATACTTGGTTCACATCCTTCAAAGCATCAGTTACCAATGACAGAATCCACACCAAAAACTAAACCAAGACATGATTTGACTCCACTATCTGCTCTTATTAAACAAGTAGAAGGAGATGGAGTTCCTTCCAAGCCAAGGCTAAGAACTCCTCCAAGCTTACTTAGACGACCTTCATTTCCTACAATAATGAGGTTGGCTGGGTTTGATGTTCCAAATGCTGCAAATGATACTGGGAAGCTAGGTCCAAATAAAGTAGCTCAGGAATCTGAGATAAGCCATTGTCAGTTGAATAATGGCAATGTACCAATTTCTAGACAGCCTCAGAATGATTTTGGAAGAAGTTCCAAAGGAATGCAAACAGACAGCGGTAATTCTGCCTCATCTTCAGTCTCTATGCATGGATTTGAACTTTCTGATGATGCAACAACTTTTATTGACTTGAGAGAACAGATACTTCCTGATCATGAGAGTGTAGGTGTGGAATCAAGTCCAGACAGCATGCCACTTGCAACCTGTTCACACTATAAGATGGTTGAACAAGTGTCTGGAGAGACCCCTGAGGTTACCCTGGATTTTCAGAATAATATTGGCAAAAATGAGAAAGTTAGTCCCAGTTTAACTCTTGATCACCCTGTTGAAGATTCTATAGTGGAAGATGGTCTTCACATAAATCAGACAACCATATCTGTTGCCTTCGGGGATGGTAATATATCTGTTGACCCCCCTGCTGAAGCCACAAAAGAAATCAAAGATCTTCAAGATGTTTCTACTGAAATGGTTTTAACCAAGTCTCTCAAACATCCACTCCCAAATTCTGGAGTTTGTGAAGTTAGTCCAGTAAGCAAGCCTGATACAATTAGCCAGCCAAAACTAGTGTGTAACTTATCTGGCGATGACAAATTTACAGTGAAGGAGCGACTGTCAATGGTGGCTGAAACTGCGCCATCGATTATCACTACTAAAATACCAAGCCAGAAAGTTTTGCAAGAGAAAGGAACATTGTTACAGAATCCTGCACAAGAAAAGCCTGATGCTGGACATCTTCCTCCAGCCTTTGATGATGTTATCCATGTTATACGCCATAGCAGTTACCGTGTTGGGAGTGAGCAGCAGCAGCAGCCAGTAAAGGAAACTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTAATCAACGGATTGAGGGATGATTTAGAATTGAGAAACATGAGCTCTCCTAAGACCCTTCAATCATCAAGTTGCGCTGAAGCTGCAAGCATTAAATCAAATATTTCTGATCACTGTGAATTGAGAAACACAAACACCCCTGCCACCCTTAAATCTTCAAGCATCTCCGATGCGTTGAATTCAACATCGAGTATCTCTGATCATCCCGATCTTAAGGAACAGGATATGAGTAACCAAGTTTCTTTAGTTTCAGAATCTGATTCGACCGAGTTAATAAAAAATAACACTCCAGTGACTGAAGACAAACCAGCATCATCAAAGGAAATATTGGATGTGAAATCTTTCAGGCAGAGAGCAGAGGCACTCGAAGAGCTCTTAGAATTGTCTGCAGATTTGTTGCAGCAAAATAAATTGGAGGAACTTCAAGTTGTTCTAAAGCCTTTCGGAAAAGATAAGGTCTCTCCAAGAGAGACAGCCATTTGGTTAGCCAAGAGTCTTAAAGGAATGTCATTTGAGGAAAATGGAGGACGTTGTTCATGA 3090 0.4091 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTEKCRRSAHQEMALIARIQHPYILEFKEAWVEKGCYVCIVTGYCEGGDMAELMKRSNGAYFPEEKLCKWFTQILLAVEYLHSNYVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRHAFKAFDMAGLISKINRSSIGPLPPCYSPSLKILIKSMLRKNPEHRPTASEVLKHPYLQPYVEQYRPSFNPPPISCSPEKPISSVYRSRKNMVESQNSNSSSSDKDSLMSNERDIATAVPKCDNKGTDTDMTSIDDDGSEHLLPCEQESHSSNANTKTVEQDLKKPSHSEQCSNVESKQPKTVRNLMVVLKEGKVRETNSPMRGSRVKASGVPTPKINTETLSRLPKPIFGSPSLKPNLEPPTAALARATPHSVKRILGSHPSKHQLPMTESTPKTKPRHDLTPLSALIKQVEGDGVPSKPRLRTPPSLLRRPSFPTIMRLAGFDVPNAANDTGKLGPNKVAQESEISHCQLNNGNVPISRQPQNDFGRSSKGMQTDSGNSASSSVSMHGFELSDDATTFIDLREQILPDHESVGVESSPDSMPLATCSHYKMVEQVSGETPEVTLDFQNNIGKNEKVSPSLTLDHPVEDSIVEDGLHINQTTISVAFGDGNISVDPPAEATKEIKDLQDVSTEMVLTKSLKHPLPNSGVCEVSPVSKPDTISQPKLVCNLSGDDKFTVKERLSMVAETAPSIITTKIPSQKVLQEKGTLLQNPAQEKPDAGHLPPAFDDVIHVIRHSSYRVGSEQQQQPVKETVEMGVQNVDVGKLINGLRDDLELRNMSSPKTLQSSSCAEAASIKSNISDHCELRNTNTPATLKSSSISDALNSTSSISDHPDLKEQDMSNQVSLVSESDSTELIKNNTPVTEDKPASSKEILDVKSFRQRAEALEELLELSADLLQQNKLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMSFEENGGRCS 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0443 1029 MobiDBLite consensus disorder prediction 295 314 - -
Lal1g0443 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lal1g0443 1029 Gene3D Transferase(Phosphotransferase) domain 1 90 335 - -
Lal1g0443 1029 MobiDBLite consensus disorder prediction 321 382 - -
Lal1g0443 1029 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Lal1g0443 1029 MobiDBLite consensus disorder prediction 557 591 - -
Lal1g0443 1029 Coils Coil 972 992 - -
Lal1g0443 1029 MobiDBLite consensus disorder prediction 403 423 - -
Lal1g0443 1029 CDD STKc_Nek 7 262 - -
Lal1g0443 1029 SUPERFAMILY Protein kinase-like (PK-like) 4 304 IPR011009 -
Lal1g0443 1029 MobiDBLite consensus disorder prediction 295 310 - -
Lal1g0443 1029 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0443 1029 MobiDBLite consensus disorder prediction 349 364 - -
Lal1g0443 1029 MobiDBLite consensus disorder prediction 332 348 - -
Lal1g0443 1029 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Lal1g0443 1029 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0443 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 550 - -
Lal1g0443 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 574 1012 - -
Lal1g0443 1029 MobiDBLite consensus disorder prediction 463 485 - -
Lal1g0443 1029 MobiDBLite consensus disorder prediction 897 924 - -
Lal1g0443 1029 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0443 1029 MobiDBLite consensus disorder prediction 897 917 - -
Lal1g0443 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 574 1012 - -
Lal1g0443 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0443 Lal-Chr1 2752140 2758545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0443 14 263 MAP Kinase Kinase Kinase AT1G53570 32.549 3.77e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal1g0443 Pkinase 2.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0443 K08857 - gmx:100818747 1457.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0443 1 2752140 2758545 Lal1g0443 1 2752140 2758545 ECH
Lal1g0443 1 2752140 2758545 Lal2g0378 2 2227070 2233025 LSH