Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0441 ATGTCAGACACGACGCCATCACCCTACGCCGCCGCTAACCCATCGGCGCAGGTTATGCACACAATGAAACGGAAACTTCCGTTTTCCTCAATGAATCCGCCGTTTGTCGGCGCCGGATATTATCATCGCTTTTCCCTTGACCGACGCCGAGATTTTGACCAACCAGACGAAGCCATAGTCGTCAAATCTCTAAAATTGAAGCGGAAGAATGAAGTGTCTGATTTTGAAGGTGATTCTGGTGATGGGATGAATCCTGGATTCACTGATGCAGCTAATAGGCCTTTTCAGACACCTGTATCAGGAACGATGGGGAAGGGTGGCAAGTCCTCCAGGCCTACAAAATGCAATAGATCTGCACCTCAAACCCCTGGATCAAATATTGGTTCTCCTTCAGGCAATAATCTCACACCTGCTGGTCCATGTCGGTATGACAGCTCTTTAGGTACGTTGACAAGGAAATTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATCTGAATAATGCTGCTGACACATTGGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATCGGCCTTATAGAAAAGAAGCTCAAGAACAGAATTCAATGGAAAGGACTGGATGTTTCAAGACCAGGGGAGGCTGAAGAGTGTTTTAGCAGTTTACAGACAGAAGTTGAAAATCTTACAATGGAGGAGCACCGGTTAGATGAACAGATAAGGGAGATGCAAGAAAGACTACAAGAACTTAGTGAAGACAAACACAATGAGAAGTTGCTTTTTGTCACCGAGGAAGATATAAAGAATTTGCCCTGTTTTCATAATGAAACCTTGATAGCAATTAAAGCTCCACAAGGCACCACTTTGGAGGTTCCTGATCCTCTTGAGGATGCTGATTATCCTCAGGGGAGATACAGGATAGTCCTGAGAAGCACAATGGCTCCAATAGATATTTACCTTGTCAGTCAATTTGAAGAGAAGTTTGAGGAGGTTAATGTTGATATTGCACCCAAATTTCCATCGACTCCAGAATTTAACAAGCAACAACCAACAGTGGCTGCAGAGGATAGAGGGAAAGGAATAGAAGTGCAGGAACAAGATTGTCATGATCCTAGTTCAGATTTTACTACCGCACAGGACTTCATGAGCGGAATAATGAAGATTGTTCCTTCAGATGTTAATAGTGGTGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGAGTTGAGTGGAACGAACTGGATAATACACTTCCAGAATATCCTGCAACTCATGAGCTCGCTGCCTCCCCAATTCATCCTCCAAATGCAAGTGAAGCCCCTTCGACATCTAACCCAACTGGAGGTTGA 1383 0.4367 MSDTTPSPYAAANPSAQVMHTMKRKLPFSSMNPPFVGAGYYHRFSLDRRRDFDQPDEAIVVKSLKLKRKNEVSDFEGDSGDGMNPGFTDAANRPFQTPVSGTMGKGGKSSRPTKCNRSAPQTPGSNIGSPSGNNLTPAGPCRYDSSLGTLTRKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEAEECFSSLQTEVENLTMEEHRLDEQIREMQERLQELSEDKHNEKLLFVTEEDIKNLPCFHNETLIAIKAPQGTTLEVPDPLEDADYPQGRYRIVLRSTMAPIDIYLVSQFEEKFEEVNVDIAPKFPSTPEFNKQQPTVAAEDRGKGIEVQEQDCHDPSSDFTTAQDFMSGIMKIVPSDVNSGADYWLLSDADVSITDMWRTESGVEWNELDNTLPEYPATHELAASPIHPPNASEAPSTSNPTGG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0441 460 Coils Coil 220 261 - -
Lal1g0441 460 MobiDBLite consensus disorder prediction 89 140 - -
Lal1g0441 460 Gene3D - 215 324 - -
Lal1g0441 460 Coils Coil 158 178 - -
Lal1g0441 460 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Lal1g0441 460 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Lal1g0441 460 MobiDBLite consensus disorder prediction 90 140 - -
Lal1g0441 460 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Lal1g0441 460 Gene3D - 136 209 IPR036388 -
Lal1g0441 460 PANTHER TRANSCRIPTION FACTOR E2F 20 439 IPR015633 GO:0000978|GO:0006357
Lal1g0441 460 PANTHER TRANSCRIPTION FACTOR E2FB 20 439 - -
Lal1g0441 460 CDD E2F_DD 221 324 IPR032198 GO:0046983
Lal1g0441 460 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Lal1g0441 460 MobiDBLite consensus disorder prediction 433 460 - -
Lal1g0441 460 SUPERFAMILY E2F-DP heterodimerization region 221 324 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0441 Lal-Chr1 2737596 2744014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0441 23 459 E2F-DP Transcription Factor Family AT5G22220 53.747 1.18e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal1g0441 E2F_CC-MB 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0441 K06620 - gmx:100819817 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0441 1 2737596 2744014 Lal1g0441 1 2737596 2744014 ECH
Lal1g0441 1 2737596 2744014 Lal2g0376 2 2210635 2216853 LSH
Lal1g0441 1 2737596 2744014 Lal9g0342 9 2262478 2267731 LSH