Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0432 ATGCCAATGGGAAAGGCAGATTCTTCATCTCTTTCTAAGCCATCTGATCCTGAAAAGCCAGCTGAATCTGATGAGCGGGTCAATTTTAATGATGCAAATGATTCCGAGGTAGAAATGGAAGAAGTTGAATATGAAGAAATAGAAGTAGAAGAGGAGGTGGAAGAAGAGGAGGAGGAGGATCCGGAGGAGGAAGAGTATGAGGAGGAAGAGGTGGAGGAGGAGGAAGAAGAGGTTGAAGAAGTGGAAGAAGACGATGACAAAGTGGAAGATGAGAATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGTATTCCTCTTGATGCCTCAAATGAGGATTTGAAGGCTTTTTGTGAACATATTGGGGAAGTTACAGAGGTTCGTATCATGAAAGGCAAGGATGCTTCTGAGAATAAGGGCTTCTGTTTTGTGACTTTTAGAAGTGTGGAATTGGCTTCTAAAGCCATTGAGGAGCTGAACAATAAAGAATTTAAGGGTAAAAAAATAAAATGTTCTACAGCTCAAGCAAAACACCGCCTTTTTATTGGCAATGTTCCTAGAAGCTGGGACGAGGAGGATCTGAGGAAGGTTGTAGCTGAAATTGGACCTGGTGTTACTTCTTTAGAACTAGTCAAGGATATGAAGAACATAAAAAATAACCGTGGCTTTGCTTTTGTCGACTATTATAATAATGCATGTGCCGAATACTCAAGGCAGAAGATGATGAACCCATCATTTAAGCTAGGTGGCAATGCTCCGACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCTTCTGCTTCATCTCAGCCAGCAAAGGCCACATTATCCAAGCTAACATTAAATCTGAAACCTTCTCAATCAGCTGAAGGGGATGTGCGATGTGTCGAATGTGGTGGTCACTGTGAATTCTTAAGCATGTATAAACAGGTGAAAGCAGTATATGTGAAGAACTTGCCTAAGAATGTAACTCAAGAACAGTTGAAGAAGCTTTTTGAACATCATGGAAAAATCACAAAGGTGGTTCTTCCATCGGCAAAGTCTGGGCAGGAAAAGAACAGGATCGGTTTTGTTCATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTAAAAAACACTGAAACGTATGAATTGGAAGGTCAAATTTTGGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAATACACAGAAGCCAGGGTTGCTTCCAAGCTATCCACCACAGGTTGGTGGTTATGGTTTGCTAGGGGGTCCCTATGGTGCACTTGGAGCAGGATATGGTGCTCCAGGTCTTCCACAGCCCATGATGTATGGAATGGGTCCAACTCCTGCTGGAATGGGCATGATGCCTATGCTTCTGCCTGATGGTCGGATTGCATATGTCATGCAACAACATCCGGGAATGCAGCCACAAGCACATGGACAAACCCCACCCTCACACCAGAGAGGTGGCAGGAGTGGCGGTAATGGCAGGAGTGGCGGCGGTGGTGGTGGCAGGAGTGGCGGTGGTGGTGGCAGTAGTGGCAGTAGTGGCAGCAGGAATACTGGCAGTTCAAATAAGGGGAGGCACAACAATGATAGTGGCCAAGGGCGCAGATATCGCCCATATTAG 1656 0.4499 MPMGKADSSSLSKPSDPEKPAESDERVNFNDANDSEVEMEEVEYEEIEVEEEVEEEEEEDPEEEEYEEEEVEEEEEEVEEVEEDDDKVEDENEKKKHAELLSLPPHGSEVYIGGIPLDASNEDLKAFCEHIGEVTEVRIMKGKDASENKGFCFVTFRSVELASKAIEELNNKEFKGKKIKCSTAQAKHRLFIGNVPRSWDEEDLRKVVAEIGPGVTSLELVKDMKNIKNNRGFAFVDYYNNACAEYSRQKMMNPSFKLGGNAPTVSWADPKNADSSASSQPAKATLSKLTLNLKPSQSAEGDVRCVECGGHCEFLSMYKQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPSAKSGQEKNRIGFVHFAERSNAMKALKNTETYELEGQILECSLAKPQADQKSGGSNTQKPGLLPSYPPQVGGYGLLGGPYGALGAGYGAPGLPQPMMYGMGPTPAGMGMMPMLLPDGRIAYVMQQHPGMQPQAHGQTPPSHQRGGRSGGNGRSGGGGGGRSGGGGGSSGSSGSRNTGSSNKGRHNNDSGQGRRYRPY 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0432 551 SMART rrm1_1 323 396 IPR000504 GO:0003723
Lal1g0432 551 SMART rrm1_1 109 182 IPR000504 GO:0003723
Lal1g0432 551 SMART rrm1_1 189 266 IPR000504 GO:0003723
Lal1g0432 551 MobiDBLite consensus disorder prediction 518 539 - -
Lal1g0432 551 MobiDBLite consensus disorder prediction 34 88 - -
Lal1g0432 551 CDD RRM_SF 110 182 - -
Lal1g0432 551 Coils Coil 32 59 - -
Lal1g0432 551 SMART rrm2_1 323 396 IPR003954 GO:0003676
Lal1g0432 551 SMART rrm2_1 109 182 IPR003954 GO:0003676
Lal1g0432 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 400 IPR000504 GO:0003723
Lal1g0432 551 SUPERFAMILY RNA-binding domain, RBD 105 274 IPR035979 GO:0003676
Lal1g0432 551 PANTHER RNA RECOGNITION MOTIF 1 277 - -
Lal1g0432 551 PANTHER RNA RECOGNITION MOTIF 316 503 - -
Lal1g0432 551 SUPERFAMILY RNA-binding domain, RBD 320 426 IPR035979 GO:0003676
Lal1g0432 551 Gene3D - 189 269 IPR012677 -
Lal1g0432 551 MobiDBLite consensus disorder prediction 402 417 - -
Lal1g0432 551 Gene3D - 316 428 IPR012677 -
Lal1g0432 551 MobiDBLite consensus disorder prediction 483 501 - -
Lal1g0432 551 Coils Coil 63 98 - -
Lal1g0432 551 MobiDBLite consensus disorder prediction 399 419 - -
Lal1g0432 551 MobiDBLite consensus disorder prediction 482 551 - -
Lal1g0432 551 Gene3D - 25 188 IPR012677 -
Lal1g0432 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 252 IPR000504 GO:0003723
Lal1g0432 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 391 IPR000504 GO:0003723
Lal1g0432 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Lal1g0432 551 MobiDBLite consensus disorder prediction 17 33 - -
Lal1g0432 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Lal1g0432 551 MobiDBLite consensus disorder prediction 1 98 - -
Lal1g0432 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 270 IPR000504 GO:0003723
Lal1g0432 551 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 277 - -
Lal1g0432 551 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 316 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0432 Lal-Chr1 2692874 2698267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0432 110 505 Eukaryotic Initiation Factors Gene Family AT2G23350 24.697 2.97e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0432 K13161 - gmx:100806658 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0432 1 2692874 2698267 Lal1g0432 1 2692874 2698267 ECH