Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0425 ATGGGTTTGAGAGAATGCAAGAATATTGTGGAGGACAAGAATCTCTACCTTCATGCACCAACTTTCATTGAATGGCTAAAACCATTTAATTCCTCTTCTCCTTCATATCTAACTCCCACAGTATCATCTTCAATATCTTATTCTCCTTCTGTGACTCAAAATGAGCTTGTTCATGAAACTATCCAATTTTTGTCAATCTTAAATGGAAAGCCCTCAAAAGATGAAGAACTAAAAAAGAAGGTTCCTGAGGTAAAAGAAGAAAAGGTGGAACAAATGATTGTGGCTTTGCATATTGGATTGCCTAATACTACTAGTGATATAATTGAGTCTGATCATGATGAGAAGAAGGTTTTCCATGTTAAGGAAGAAGAAGAAAAAGAAGAAGAAGAGCCTTTGAATAAAACAATCTTCCATGGTAGCTCAGAGAGAAGATTTTGGATACCAAATCCAGCACAGATACTTGTTGGGCCGATGCAGTTTGCTTGCAACATATGCAGTAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGCCATGGATCAGAATATAGGAAAGGACCAGACTCACTGAGAGGAACACAACCAGCTGCAATGTTAAGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAGAACAACATCAACCACCCAAGATCAAAGCCCTTGAAGGACTTCAGAACACTCCAAACCCACTACAAAAGAAAGCATGGCATTAAACCATTCATGTGCAGAAAATGTGGCAAATCATTTGCTGTCAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCATTTGTGGATCTGACTTCAAGCATAAGAGGTCTCTTAAGGATCACGTTAGATCCTTTGGAAAGGGTCATTACCCACGTCCTAATTCTCTTGAAGAATTATTGGAGGATGAAAAGGGTTACATTACTGGGTCTGATGAAGATCATGGAGTTGCTCATAACATGATTATCTAA 987 0.3901 MGLRECKNIVEDKNLYLHAPTFIEWLKPFNSSSPSYLTPTVSSSISYSPSVTQNELVHETIQFLSILNGKPSKDEELKKKVPEVKEEKVEQMIVALHIGLPNTTSDIIESDHDEKKVFHVKEEEEKEEEEPLNKTIFHGSSERRFWIPNPAQILVGPMQFACNICSKTFNRYNNMQMHMWGHGSEYRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKSFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVRSFGKGHYPRPNSLEELLEDEKGYITGSDEDHGVAHNMII 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0425 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 264 IPR013087 -
Lal1g0425 328 Pfam Zinc finger, C2H2 type 160 179 IPR013087 -
Lal1g0425 328 SMART c2h2final6 207 239 IPR013087 -
Lal1g0425 328 SMART c2h2final6 160 182 IPR013087 -
Lal1g0425 328 SMART c2h2final6 244 264 IPR013087 -
Lal1g0425 328 Gene3D Classic Zinc Finger 157 182 - -
Lal1g0425 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Lal1g0425 328 PANTHER ZINC FINGER PROTEIN WIP2 1 320 IPR043584 GO:0003700|GO:0010468
Lal1g0425 328 SUPERFAMILY beta-beta-alpha zinc fingers 230 264 IPR036236 -
Lal1g0425 328 Gene3D Classic Zinc Finger 203 293 - -
Lal1g0425 328 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Lal1g0425 328 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 320 - -
Lal1g0425 328 SUPERFAMILY beta-beta-alpha zinc fingers 151 183 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0425 Lal-Chr1 2653671 2658777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0425 8 314 C2H2 Transcription Factor Family AT1G08290 53.959 7.06e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g0425 zf-C2H2_6 0.00026 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0425 - - gmx:100788451 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0425 1 2653671 2658777 Lal1g0425 1 2653671 2658777 ECH
Lal1g0425 1 2653671 2658777 Lal2g0346 2 2077499 2080855 LSH