Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal1g0420 | ATGAGATTGGAGAAATGCTGGTTCTGTTCTTCAACTGTCTACCCTGGACATGGAATCCAGTTTGTTCGAAACGATGCAAAGATCTTTCGATTTTGTAGATCTAAATGCCACAAGAACTTCAAAATGAAGAGAAACCCTCGGAAAGTAAAATGGACCAAGGCATATAGGCGGGTGCATGGAAAGGATATGACACAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCTGAGAGATATGACAGGAATCTTGCTGAGAATGTTCTTAAGGCCATTCCAAAGATCGATAAGATCAGAGTCCGCAGGGAGGAAGATCACCATAAGAATAGAATGAAAGGCAAGAAAGAAAAGGTGCGTAGGGAGGCGGCGAGGGAGTTGGAGCAGGGAATCAGTCTGGTCAAAGCTCCTTCTGTTCTTCAACAGGATCAGTCTCTCACTTTACCAAAGATTGTGGTCAGTGTTTCCCAACAACAATCAGAAAGCCGCATGGAAGATTTGGACTTTGTGGCAGTTATTGAATGGTTTTTTGATAGAGTAGCAGAAGTGGGAAGAAGGCCAAAAATGATTTTGGCGGTAAGAGCTTCTTTTTCTTCTTCTCCTTCTCTCTCTGTTGTTTGCCATCACAGAAACCAAACCTTGTTCCCTCTCCGTACTACTCGCCACGTTTCCATTCGATGTTCTTCAACGGTGCAAGAGATAGACAACTCCGAAGAGGAGCTCCGTTCCTATTCGCTTACATTCCCGCCAATCAGGGCGGTGATGAGGGTGGTTCTGGTGAGGCACGGCCAGAGCACATGGAACGCTGAAGGCAGAATCCAAGGCAGTTCCAATTTCTCTGTTCTCACTAACAAAGGCCACTCTCAAGCTGAGACTTCCCGCCAAATGCTCATCAATGACCGTTTCGATGTTTGCTTTGCCAGTCCCTTGGCACGGTCGAAAAGAACGGCTGAAATCATATGGGGAGCTCGCGAAGAACAAATAATTCCAGAGTACGATTTAAGGGAAATCGATTTGTACTCATTTCAAGGTCTTCTGAAGCATGAGGGACAAGAAAGGTTTGGCTCTGCTTTTCGTCAATGGCAAGTAGATCCTGTGAATTTTGTTATTGATGGTCATTATCCAGTGAGAGAGTTGTGGGAACGTGCTAGAAGCTGCTGGCCTAAAATATTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCACACAATGCTGTTAATCAAGCTCTTATTGCTACAGCAATTGGTTTGGGGCCAGAGTATTTCAGAAGCTTACTTCAGAGCAATTGTGGTGTAAGTGTGCTTGATTTCATCCCAAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGACCCCTGGTTCACCTGTTGCTGATGAGAAGTCTGGGGGTAGAGAAACGAACAAGCGAATAATACTAGTTTGTCATGGACCTACTTCGAGCAATACAGAGGATGGTTTTTCTTTTGCTGGTGATCGACCACTGGACATGCTTGGCGTTATACAGTCCCAGAAATCTGCGGAGCTACTTCTTGATTTGAGAGTGAATTCCATAATTAGCAGTCCTAATAAAGCTTGTGTTGAGACAGCAATGGCCATCTCCAAGGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTCTGTGCCACGCTATGTTGAGACGAAGCAGATCGGAAACCTTGATATTGAAACAATCTTTCAGCAATCCAAAATGGCAAGCAACTTACAGTTTAAAACTTTAAATGATATATCCACTTTTCCAACTATTCAGCCTGGTTGGTTAAATAGAATAGAGGATGGATTGAAGACAACATTATGGGATCAATCTGAAAAAACCTGGCAATCCTTGTTGGATGAAATTTCTGATGAATCTGGCACAGAAGTTGCAGTAGTAGTTGGTCATCCTGCAATCCACATAGCATTATTGGGACACTGCCTTAATTTGACTAAAGAATGGTTGGGATCATTTCATCTTGATGCTGGGAGCATTAGTGTCCTTGACTTCCCCGAGGGACCTAAAGGAGGAGGCATTGGCAGGTGCATAAATTATACTGCACATTTGGGGAGATGGTCCATCCCTATTACAAGATCGGCAGAGGATGGTGGAGAGTTTTAA | 2127 | 0.4415 | MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVRREEDHHKNRMKGKKEKVRREAARELEQGISLVKAPSVLQQDQSLTLPKIVVSVSQQQSESRMEDLDFVAVIEWFFDRVAEVGRRPKMILAVRASFSSSPSLSVVCHHRNQTLFPLRTTRHVSIRCSSTVQEIDNSEEELRSYSLTFPPIRAVMRVVLVRHGQSTWNAEGRIQGSSNFSVLTNKGHSQAETSRQMLINDRFDVCFASPLARSKRTAEIIWGAREEQIIPEYDLREIDLYSFQGLLKHEGQERFGSAFRQWQVDPVNFVIDGHYPVRELWERARSCWPKILAHDSRSVLVVAHNAVNQALIATAIGLGPEYFRSLLQSNCGVSVLDFIPRSEGGSPHICLNRLNQTPGSPVADEKSGGRETNKRIILVCHGPTSSNTEDGFSFAGDRPLDMLGVIQSQKSAELLLDLRVNSIISSPNKACVETAMAISKVQEAADCLGADSVPRYVETKQIGNLDIETIFQQSKMASNLQFKTLNDISTFPTIQPGWLNRIEDGLKTTLWDQSEKTWQSLLDEISDESGTEVAVVVGHPAIHIALLGHCLNLTKEWLGSFHLDAGSISVLDFPEGPKGGGIGRCINYTAHLGRWSIPITRSAEDGGEF | 708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal1g0420 | 708 | CDD | Ribosomal_L24e_L24 | 1 | 54 | IPR000988 | - | |
| Lal1g0420 | 708 | ProSitePatterns | Ribosomal protein L24e signature. | 8 | 25 | IPR023442 | - | |
| Lal1g0420 | 708 | CDD | HP_PGM_like | 474 | 678 | IPR013078 | - | |
| Lal1g0420 | 708 | Pfam | Histidine phosphatase superfamily (branch 1) | 475 | 540 | IPR013078 | - | |
| Lal1g0420 | 708 | Pfam | Histidine phosphatase superfamily (branch 1) | 257 | 438 | IPR013078 | - | |
| Lal1g0420 | 708 | Gene3D | - | 466 | 695 | IPR029033 | - | |
| Lal1g0420 | 708 | PANTHER | BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED | 226 | 440 | - | - | |
| Lal1g0420 | 708 | PANTHER | BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED | 625 | 708 | - | - | |
| Lal1g0420 | 708 | CDD | HP_PGM_like | 256 | 437 | IPR013078 | - | |
| Lal1g0420 | 708 | Pfam | Ribosomal protein L24e | 1 | 65 | IPR000988 | - | |
| Lal1g0420 | 708 | Gene3D | Ribosomal protein L24e | 1 | 68 | IPR038630 | - | |
| Lal1g0420 | 708 | PIRSF | 6PFK_fruc_bisph_Ptase | 253 | 425 | - | - | |
| Lal1g0420 | 708 | PIRSF | 6PFK_fruc_bisph_Ptase | 25 | 185 | - | - | |
| Lal1g0420 | 708 | PIRSF | 6PFK_fruc_bisph_Ptase | 627 | 664 | - | - | |
| Lal1g0420 | 708 | ProSitePatterns | Phosphoglycerate mutase family phosphohistidine signature. | 259 | 268 | IPR001345 | GO:0003824 | |
| Lal1g0420 | 708 | SMART | 4TRASH | 6 | 44 | IPR011017 | - | |
| Lal1g0420 | 708 | PANTHER | 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED | 226 | 440 | - | - | |
| Lal1g0420 | 708 | PANTHER | 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED | 625 | 708 | - | - | |
| Lal1g0420 | 708 | SUPERFAMILY | Phosphoglycerate mutase-like | 255 | 451 | IPR029033 | - | |
| Lal1g0420 | 708 | SUPERFAMILY | Phosphoglycerate mutase-like | 473 | 696 | IPR029033 | - | |
| Lal1g0420 | 708 | Coils | Coil | 109 | 129 | - | - | |
| Lal1g0420 | 708 | Gene3D | - | 254 | 442 | IPR029033 | - | |
| Lal1g0420 | 708 | SMART | PGAM_5 | 256 | 410 | IPR013078 | - | |
| Lal1g0420 | 708 | SMART | PGAM_5 | 474 | 645 | IPR013078 | - | |
| Lal1g0420 | 708 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 56 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal1g0420 | Lal-Chr1 | 2611523 | 2618846 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal1g0420 | 1 | 160 | Cytoplasmic Ribosomal Protein Gene Family | AT2G44860 | 67.500 | 2.24e-70 | 224 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal1g0420 | K22200 | - | gmx:100794084 | 801.971 |
Event-related genes