Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0414 ATGATGGAAACGCCGGTTGCTAGACCGAGGGGAAGGCCTCGTAAGCGGAGAAGAAAGGACGAAGAAAAACCGGTTCCGGAATCAAAGAGGCAAGTTGTGGAGAGAAAACCGATAGCATTGATTGGGCGATTCGTGCAGAAAAAGTTACGGAGAAAACGAAATTTTATCGGTAAGGTTGTGCATTATGAATGTGGATTGTATAGGGTTTATTACGAGGATGGGCATTGTGAGGATATATATAGCGGGGAGGTTCGTGCAATTCTCATCAATGATAATGATTTGGATGCTGGTTTGACTAGAAGGAAGGTTAAATTAGAGGAATTGGTGTCACAGATTAGTGTAAAGGTTGTAGATGAGAAACATAAGGGTTCTGCTGATCAGAATGAAGAGGAATTGAAGGTTGGTGTGGCTGTTTCTAGTGAATTGAACAATGAGGAACAATATGATGATGAATCAGGAGATTCAAGTATGGGTTTAGGGGAAAAGGGTCCCAGCACTGAGGCTGAGACACTGCCTCTGCCGCCACCACTGCAGTTGCCTCCTTCATCGGGAACTGTTGGAGTGCCGGATCAATATGTCTCACACCTGTTTGCCGTTTATGGATTCTTAAGATCATTCAGCACTTGCCTTTTTTTAACTCCCTTTACTCTGGATGACTTTGTTGGCGCTCTCAACTACCAAGTTGCGAACACATTGGTTGACGCTATTCATGTCTCCCTTATGCGCACGATAAAGCATCATCTTGAAACCGTTTCATCCGAGGGACCGGAGCTTGTGTCAAAATGCTTTAGGTGTAATGATTGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTTGCAATTCAGTATTTAATCATTAATGGATACACAAAAGGGCCTGAGTGGAACGGATTTTATGATGAGATTTTTACCGGGGAGTATTATTTATTTCCTGTGAGTAGGAAACTGATGATATTGCAAATTCTTTGTGATGATGTTTTGGACTCTGAGGAGATAAAAGCTGAAATGAATATGCGCAAAGATTCGGAGGTAGGGGTAGATTATGATGCAGAACATAACCCTCCTTTGGAAATCAGGCCGAGAAGAGTCCATCCAAGATATGCCAAGACTTCTGCTTGTGAGGATAAAGAAGCAATGGAGTTTACTTCAGTATCAAATGCTGTGAACCAATCTGGTAATTCTATTTCATATTTTGGAGATACCGAAAGCACTGAGGATGGTGAAGATGATAGAAATGGAGATGAATGTCGCCTCTGCGGTATGGATGGGATTCTGCTTTGTTGTGATGGGTGCCCCTCTGCTTACCATTCGAGATGTATCGGTGTGATGAAAATGTATATACCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATTAACATGATTGGGCCAACAACTGTAAAGGGAACATCACTTAGAGGGGGTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTTGTGGGTACTTGCAACCACTTGCTGGTGTTCAATACCAAAGATGATAGATTTGGGCTTAAATATTACAATCAGAATGACATTCCTAAACTCCTCCAATTGCTTTATGAATCTATGCAGCATAGACCAATGTATTATGGTATTTGCATGGCAGTGTCACAATACTGGAACATACCAGGTAGTGTCTTGCCTCTTTCTGTTTCAACTGGAACAAATATAAACTCGGCGATTAAAAAGGAAGAGACAGATTTACATACTTCATTACTTCCTCCCTCAGGTGAAGTCAATCATAATCTTATTAATTTGGTGAAGGGAGAGTACCCTGTAGCCAACTCGAGTTTGAATCATGGTGATATTGCTGTGTCATCTCTTGATATTTCATCAGTTACCACTCAAAGTCCTTCTCATGAAAGCCTTTGTAATGCTAGAAATAAAGAGTGCCCTGTTGTGAATACAAAGCTTCCTTTGGAAACTAGTCATCAGTGTGATGTGAATCACCATCATTTTGTGGATAGTTTAATTGCAATAGATCATTCTAAGAACTCTTTGGTAAACAGACTCTACAATAATCTTGGCCATGCAAATGATATGGGGTTGCCCACAAATTTTTCAGTGCAAACCAAAGAAAGCGCTCAAGTAGGTTTTGGAAAGTGTGAACGCAATACTACTAATAATTTTGGGTACATGGGTTTCTCCTATAAACCTCTGTCGTACATTAACTACTACATACATGGTGAATTTGCTGCATCTGCTGCTGCTAAACTGACCGTTCTTTCTTCAGAGGAGTCTAGGTCAGAGGGTCATGTATCAGGCAATCAGAGGAAAACTACAGCTGCGATTGTTTATTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCATGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAATCCGCTGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACTAAAAGTGCTATGAAATTTTTTACCGGTTTTTCTGTTTTAAGAAATGGAGAGGGAAATCTTCATAGCATTGCAACATATATTATATACATACAGGAATGTTTACGTGGTTTAATTGTTGGGCCCTTCCAAAGAGCAAGCTACAGAAACCAATGGCGTAAGCAAGTTTTAGAAACCACAACATACAGTGCTCTCAAGCCACTTTTACTTGAATTTGAGGAGAATATTCGTACAATTGCTTTTTGTGGGGACTGGGTTAAGCAGATGGATGATTGTTTGGCAGACTCTTCCATAATACAAAGTGCTGCATCTTCTCTGGGAACAACACATAAACGTGCACCAAGTGGGAGGCGTTACAAAAAGCGATTAGCTATTGATGAAGCTAAAGTTGATGCAACCACAAAAAGCTTTGCATGGTGGCGAGGCAGCATATTCACCAAGTTTGTATTCCAGAAAGCAGTTTTGCCATTATCCATGCTCAGAAAAGCAGCTCGACAGGGCGGTCGGAGGAAAATTTCTGGTATTTTCTATACTGATGGCTCTGAAACCCCTAAAAGAAGCAGACAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGAAATGCATCACAATTGGCACTTCAGGTAAGATATCTAGATTATTATCTCAGATGGAATGATCTTATTCGCCAGGAACAGAACATCCAGGATGGGAAAGGTCAAGAACCTGAAGCTTCTACTTTCAGAAATGCAAATATATGTGATAAAAAGCTTGTAGAGGGAAAATGTTGTTATGGAGTAGTTTTTGGGAGCCAAAAGCATCTTTCTTCTCGGGTGATGAAAAATATTGTTGAAATAGAGCAAGATTCGGGTGGAAAGGAAAAATATTGGTTTTCTGAAGCACACATTCCTTTACATTTGGTAAAAGAGTATGAAGAGGGTAACACAAAAGTGCCATCTGGTGAAGGGTGCTTGAATTTTGTGTCTCACTTGCACAAAAGGCGGTTGAAGGCAAAGTGCAAGGACATATTTTTTTACCTTGCCTGCAAGAGAGACAACTTGGACATGCTCTCGTGTTCTGCATGTCATATGGGTGTTTCATTTAGGATTGCTTTCAAGTGTAGTGCATGTCAAGGTTATTGTCATGAGGGCTGTTCTATAAGTTCAAAGGTTTACACAAATGGGAAACTTGAGTACTTGACCACATGCAATCATTGTCACCATGCTAAGTTACTTGCTCTAAAAGAGACTAGTGATCAATCTCCAACTACTCCCTTGTTCTTACAAGGACGAGAAACTGGTTCTGTGATGGTTTTGAAGGGACCAAGGCCTAAATGTTATGATCAAGCACTGATATCTACCAGGACAAAGGCTAGTTCTCCTGACATGAACCAAGTTGGGCCTGTGTCAGTTTTGAGGGGAACAAGGTCTAAATGTGATGATCGAGCATTGACTTCTACCGGGACAAAAGATAGTTGTCCTCCTGACAAGAAACAAGTTCTTTTTAATTCCACTTCCGCAGCAAAAAGCCGACACAGGAATAGTTCCTGGGGTATTATATGGAAAAAGAGAAACAATGAAACTGTTGAAAATTCAGCAGCAGACATTGATTTCAGGCTCAAAAACATTCTTTTAAAGGGAGGTTTCGGCATGCCTCAAATTGAACCTGTTTGTCACTTGTGTCGTAAGGCATATAGGTCTGATCTGATGTATATTTTCTGTCAGACATGCCAAAATTGGTATCACGCTGAAGCTGTTCAACTTGAAGAGTCCAAAATTTTGGATGTGTCGGGCTTCAAATGTTGTAGGTGCCGCAGGATAAAATCACCTGAGTGCCCCTATTCTGATGCGAAGCCTAAGACACAAGAGGGCAAGAAGTCCCGGTCACGCCCAACAGTTTCAAAGAAAGGGCATTTTGCATCAGATTCTGATTCTGGAACATTTTCTGACATGACAGAATGTGAACCTGCTACACCTGTCTTTCTTGTAGATGATGATCCTCTGCTCTTTTCTCTTTCAAATGTAGAGCTGATTACAGAACCTAAGTTAGAAGTTGATGTTGACCAGAATACTGTCTCTGCGTCAGGACCTCAGAAATTACCAGTGAGAAGGCAAGTTAAGCGTGAGGGGGATGGCAATGGTCCCTTCTGGGGTAAATCTTTGCATGCTAATTTCTCAACACAAAATGAATCAGGCAACCTGTCCAACCCTGCAGGGAGGACATCAATTCCTTTAGAATATGACCCTGGTGTTTGCTTTGACAACAATCTTCTGAATGATTCTGAAAGTTTAAATTATGAATCAATGGATTTTGAACCCCATACCATCTTCTCTCTTACGGAACTGCTGCTGCCAGATGGTACTAGTAGTAGTCAGGTTGAGGGAGCTGCTGCATCTGAAGACTTGTCAGGATATTTTGGAAATTCTGGCAAACTTGTTCCTGAAGAACGTGGAGGTGTTAGCTTAGTTGAAAATCCAGATCCTACAATTTCCTTTCAAGACAGCAGCCTTTCTTGTTGTAGGCAATGTAACCAAACAGAACCAGTCCCCGATCTTTTTTGTGAGATTTGTGGGATGTTGATTCACAGCCAATGTTCAATTTGGGCTGAATCACCATCTAGGCTTGGAAATTGGAGGTGTGGTAATTGCCGGGAATGGGAATAG 5112 0.4124 MMETPVARPRGRPRKRRRKDEEKPVPESKRQVVERKPIALIGRFVQKKLRRKRNFIGKVVHYECGLYRVYYEDGHCEDIYSGEVRAILINDNDLDAGLTRRKVKLEELVSQISVKVVDEKHKGSADQNEEELKVGVAVSSELNNEEQYDDESGDSSMGLGEKGPSTEAETLPLPPPLQLPPSSGTVGVPDQYVSHLFAVYGFLRSFSTCLFLTPFTLDDFVGALNYQVANTLVDAIHVSLMRTIKHHLETVSSEGPELVSKCFRCNDWSLLDTLTWPVFAIQYLIINGYTKGPEWNGFYDEIFTGEYYLFPVSRKLMILQILCDDVLDSEEIKAEMNMRKDSEVGVDYDAEHNPPLEIRPRRVHPRYAKTSACEDKEAMEFTSVSNAVNQSGNSISYFGDTESTEDGEDDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVMKMYIPEGAWYCPECKINMIGPTTVKGTSLRGGEIFGKDLYGQLFVGTCNHLLVFNTKDDRFGLKYYNQNDIPKLLQLLYESMQHRPMYYGICMAVSQYWNIPGSVLPLSVSTGTNINSAIKKEETDLHTSLLPPSGEVNHNLINLVKGEYPVANSSLNHGDIAVSSLDISSVTTQSPSHESLCNARNKECPVVNTKLPLETSHQCDVNHHHFVDSLIAIDHSKNSLVNRLYNNLGHANDMGLPTNFSVQTKESAQVGFGKCERNTTNNFGYMGFSYKPLSYINYYIHGEFAASAAAKLTVLSSEESRSEGHVSGNQRKTTAAIVYLQAKAFSLTASRFFWPSSEKKHVEVPRERCGWCFSCKSAVSSKKGCMLNHAALSATKSAMKFFTGFSVLRNGEGNLHSIATYIIYIQECLRGLIVGPFQRASYRNQWRKQVLETTTYSALKPLLLEFEENIRTIAFCGDWVKQMDDCLADSSIIQSAASSLGTTHKRAPSGRRYKKRLAIDEAKVDATTKSFAWWRGSIFTKFVFQKAVLPLSMLRKAARQGGRRKISGIFYTDGSETPKRSRQLVWRVAVQMSRNASQLALQVRYLDYYLRWNDLIRQEQNIQDGKGQEPEASTFRNANICDKKLVEGKCCYGVVFGSQKHLSSRVMKNIVEIEQDSGGKEKYWFSEAHIPLHLVKEYEEGNTKVPSGEGCLNFVSHLHKRRLKAKCKDIFFYLACKRDNLDMLSCSACHMGVSFRIAFKCSACQGYCHEGCSISSKVYTNGKLEYLTTCNHCHHAKLLALKETSDQSPTTPLFLQGRETGSVMVLKGPRPKCYDQALISTRTKASSPDMNQVGPVSVLRGTRSKCDDRALTSTGTKDSCPPDKKQVLFNSTSAAKSRHRNSSWGIIWKKRNNETVENSAADIDFRLKNILLKGGFGMPQIEPVCHLCRKAYRSDLMYIFCQTCQNWYHAEAVQLEESKILDVSGFKCCRCRRIKSPECPYSDAKPKTQEGKKSRSRPTVSKKGHFASDSDSGTFSDMTECEPATPVFLVDDDPLLFSLSNVELITEPKLEVDVDQNTVSASGPQKLPVRRQVKREGDGNGPFWGKSLHANFSTQNESGNLSNPAGRTSIPLEYDPGVCFDNNLLNDSESLNYESMDFEPHTIFSLTELLLPDGTSSSQVEGAAASEDLSGYFGNSGKLVPEERGGVSLVENPDPTISFQDSSLSCCRQCNQTEPVPDLFCEICGMLIHSQCSIWAESPSRLGNWRCGNCREWE 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0414 1703 MobiDBLite consensus disorder prediction 1431 1464 - -
Lal1g0414 1703 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 3 1282 - -
Lal1g0414 1703 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1285 1700 - -
Lal1g0414 1703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 464 IPR013083 -
Lal1g0414 1703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1365 1438 IPR013083 -
Lal1g0414 1703 MobiDBLite consensus disorder prediction 143 183 - -
Lal1g0414 1703 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 295 337 IPR028942 -
Lal1g0414 1703 SMART PHD_3 1373 1421 IPR001965 -
Lal1g0414 1703 SMART PHD_3 1655 1700 IPR001965 -
Lal1g0414 1703 SMART PHD_3 1174 1223 IPR001965 -
Lal1g0414 1703 SMART PHD_3 415 458 IPR001965 -
Lal1g0414 1703 CDD PHD_SF 1373 1420 - -
Lal1g0414 1703 ProSiteProfiles DDT domain profile. 190 250 IPR018501 -
Lal1g0414 1703 SUPERFAMILY FYVE/PHD zinc finger 385 459 IPR011011 -
Lal1g0414 1703 SUPERFAMILY FYVE/PHD zinc finger 1371 1426 IPR011011 -
Lal1g0414 1703 MobiDBLite consensus disorder prediction 1450 1464 - -
Lal1g0414 1703 PANTHER PHD FINGER FAMILY PROTEIN 1285 1700 - -
Lal1g0414 1703 PANTHER PHD FINGER FAMILY PROTEIN 3 1282 - -
Lal1g0414 1703 MobiDBLite consensus disorder prediction 1431 1446 - -
Lal1g0414 1703 ProSitePatterns Zinc finger PHD-type signature. 416 457 IPR019786 -
Lal1g0414 1703 Pfam PHD-finger 416 458 IPR019787 -
Lal1g0414 1703 Pfam DDT domain 192 245 IPR018501 -
Lal1g0414 1703 SMART testlast3 190 250 IPR018501 -
Lal1g0414 1703 ProSiteProfiles Zinc finger PHD-type profile. 413 460 IPR019787 -
Lal1g0414 1703 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0414 Lal-Chr1 2552939 2561754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0414 281 588 EF-hand Containing Proteins AT5G22760 47.812 4.83e-79 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lal1g0414 DDT 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0414 - - lang:109351702 2706.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0414 1 2552939 2561754 Lal1g0414 1 2552939 2561754 ECH
Lal1g0414 1 2552939 2561754 Lal2g0328 2 1985034 1994896 LSH