Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0406 ATGGGTCAGATCCAGTACTCTGAAAAATACTTTGATGATACTTATGAGTATAGGCACGTGGTTCTGCCTCCTGAAGTCGCAAAACTGCTCCCGAAGAATCGCCTTCTCTCTGAAAACGAGTGGCGTGCAATTGGGGTTCAACAGAGTCGTGGATGGGTTCACTATGCAATTCATCGCCCAGAGCCACACATAATGCTTTTCAGGAGGCCTTTGAATTATCAGCAACAGCAGGAAGCTCAGGCTCAGCAAAGTATGCTTGTCAAATGA 267 0.4644 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQEAQAQQSMLVK 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0406 88 SMART CKS_2 3 72 IPR000789 GO:0016538
Lal1g0406 88 SUPERFAMILY Cell cycle regulatory proteins 1 82 IPR036858 GO:0016538
Lal1g0406 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Lal1g0406 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 85 - -
Lal1g0406 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 85 - -
Lal1g0406 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Lal1g0406 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Lal1g0406 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Lal1g0406 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Lal1g0406 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Lal1g0406 88 Gene3D - 1 84 IPR036858 GO:0016538
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0406 Lal-Chr1 2499038 2500356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0406 1 80 Core Cell Cycle Gene Families AT2G27970 91.250 1.31e-53 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0406 K02219 - gmx:100786340 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0406 1 2499038 2500356 Lal1g0406 1 2499038 2500356 ECH
Lal1g0406 1 2499038 2500356 Lal9g0300 9 1918923 1922765 LSH