Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0404 ATGGAGAAGGAGCAAGGTGTGGGAAGTGATGAAAATTTGGTGATCATGGCAAAGGGAAAACGTACCAAACGGTTGAGGCTTTTGTCCTCTGATTGTGGTGGTGCCACTGCAGCCACATGCACTCATTCAAATGCTAATTCTGAAGATAGTTCATCAACCACCACTTATGATAACACTGATCAAGAAGATCAAGACATGGCTAACTGTTTGATCCTCCTCGCTCGAGGTGGAGAAACAAGAGATTTTCATCACCATCATGATCATCAGAAATTGCATGATCATGATGGTGGTGGTAATAACAATAATTTAGAGAAAGGTAGAAGCAGTGGCACTAGTAGTGCTGGGAAATTTGTAGAGATGGCTACAGCTACAAATAATTTTACGAAAAGTGATTTCTTTGTTTATGAGTGCAAAACTTGTAACCGAACATTCCCTTCCTTTCAAGCGTTGGGTGGCCATAGGGCTGGTCACAAAAAGCCCAAGTTCGTGTTTCCAGAGGAAAAGAAAACATCACCACCACCACCACAACCGCAACCACGGTTGTTGAGCAGATATAATGCTAATTCTGAAGAAGTTGGGAAACCCCACATAAAAAATACCCCTCCAATTTCCTTTCAATTGGAGAGGCAGGCTAATAGATCAATTTTCAATGCTAACAAGGCCAAAATTCATGAATGTTCCATATGTGGCTTAGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGAGCCGCCACAAACACTGCCACCACTAAGGCTCTTGCAGCGGTGAAAGTAGAAGTTCAGCACCGGAGGAATTTATTAGAATTGGATCTTAACCTTCCAGCACCAGAGGAGGATCTCCGAGAATCAAAGTTTCAGTTTCCGGCAACCCAAAAATCTATGGCGCTGTCTGCATCTGCGGCTTTAGTAGATTGCCATTATTAG 939 0.4313 MEKEQGVGSDENLVIMAKGKRTKRLRLLSSDCGGATAATCTHSNANSEDSSSTTTYDNTDQEDQDMANCLILLARGGETRDFHHHHDHQKLHDHDGGGNNNNLEKGRSSGTSSAGKFVEMATATNNFTKSDFFVYECKTCNRTFPSFQALGGHRAGHKKPKFVFPEEKKTSPPPPQPQPRLLSRYNANSEEVGKPHIKNTPPISFQLERQANRSIFNANKAKIHECSICGLEFTSGQALGGHMRRHRAATNTATTKALAAVKVEVQHRRNLLELDLNLPAPEEDLRESKFQFPATQKSMALSASAALVDCHY 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0404 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Lal1g0404 312 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Lal1g0404 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
Lal1g0404 312 MobiDBLite consensus disorder prediction 82 100 - -
Lal1g0404 312 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Lal1g0404 312 SUPERFAMILY beta-beta-alpha zinc fingers 134 246 IPR036236 -
Lal1g0404 312 Pfam C2H2-type zinc finger 134 160 - -
Lal1g0404 312 Pfam C2H2-type zinc finger 224 248 - -
Lal1g0404 312 Gene3D Classic Zinc Finger 133 246 - -
Lal1g0404 312 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 312 - -
Lal1g0404 312 MobiDBLite consensus disorder prediction 82 113 - -
Lal1g0404 312 MobiDBLite consensus disorder prediction 40 60 - -
Lal1g0404 312 SMART c2h2final6 224 246 IPR013087 -
Lal1g0404 312 SMART c2h2final6 135 157 IPR013087 -
Lal1g0404 312 PANTHER ZINC FINGER PROTEIN ZAT5 2 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0404 Lal-Chr1 2487392 2488330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0404 1 312 C2H2 Transcription Factor Family AT2G28200 40.233 2.54e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g0404 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0404 - - aprc:113858527 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0404 1 2487392 2488330 Lal1g0404 1 2487392 2488330 ECH
Lal1g0404 1 2487392 2488330 Lal12g0788 12 6129885 6130991 ECH
Lal1g0404 1 2487392 2488330 Lal13g0896 13 6178285 6180093 ECH
Lal1g0404 1 2487392 2488330 Lal24g0712 24 5314441 5319520 ECH
Lal20g0117 20 767694 768548 Lal1g0404 1 2487392 2488330 ECH
Lal1g1797 1 20297015 20297863 Lal1g0404 1 2487392 2488330 ECH
Lal13g0896 13 6178285 6180093 Lal1g0404 1 2487392 2488330 ECH
Lal1g0404 1 2487392 2488330 Lal2g0316 2 1887267 1888184 LSH
Lal1g0404 1 2487392 2488330 Lal9g0297 9 1909193 1910110 LSH
Lal25g0208 25 1417109 1417975 Lal1g0404 1 2487392 2488330 PCT
Lal10g1218 10 18542256 18543194 Lal1g0404 1 2487392 2488330 PCT
Lal1g0404 1 2487392 2488330 Lal25g0208 25 1417109 1417975 PCT
Lal1g0404 1 2487392 2488330 Lal10g1218 10 18542256 18543194 PCT