Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0402 ATGGAAACGAAACCAGATTTTGTTTCATCTCCTTTTATACCTGTCTCTTCTCACCTCAGCTCTTCAATTCTTTCTTCTATGGAAGAACTTGGAATTAACAACTTTGGATGCATGCATTACAGGAGGAGATGCAAGATTAGAGCACCATGTTGTGATGAGGTTTTTGATTGTAGGCATTGCCATAATGAAGTTAAGAACTCTTTGGAGATTAATCCCATGGATCGTCATGAAATCCCACGCCATGAAGTTAAAAAGGTCATCTGCTCCTTATGTGATACAGAACAAAATGTTCAACAGTACTGCATCAACTGTGGAGTATGTTTGGGCAAGTATTTTTGTGGTACATGCAAATTGTTCGATGATGATATTTCAAAGGAGCAATACCACTGTGACGAATGTGGCATCTGCAGAACCGGAGGCAGGGATAACTTTTTTCATTGTGAGAAATGTGGATGTTGCTACTCCAAGATAATGGAAGAGGGGCACCCTTGTGTTGAAAGAGCAATGCATCACAATTGTCCCATTTGCTTTGAGTATCTATTTGAAACATTAAGAGATATTACCGTCTTACCGTGCGGGCATACCATACATGTAGAGTGTGTTAGAGAGATGGAACAACATCGAAGGTATTCGTGCCCCGTTTGCTCAAAATCCATGTGTGATATGACAAATTTGTGGAAGAAACTTGATGAAGTGATTGCCTCAACTCCAATGCCTGAAATATACAAAGATAAGATGGTTTGGATATTATGCAATGACTGTGGAGCAAACTCTCATGTGCAATTCCACATAGTAGCACATAAATGCAAATCATGCAACTCATACAACACACGGCGGATACAGGGAAACCCCGGTACCTCATGCTCATCTAGAATGACTGAAATGGTTAGATGA 894 0.4016 METKPDFVSSPFIPVSSHLSSSILSSMEELGINNFGCMHYRRRCKIRAPCCDEVFDCRHCHNEVKNSLEINPMDRHEIPRHEVKKVICSLCDTEQNVQQYCINCGVCLGKYFCGTCKLFDDDISKEQYHCDECGICRTGGRDNFFHCEKCGCCYSKIMEEGHPCVERAMHHNCPICFEYLFETLRDITVLPCGHTIHVECVREMEQHRRYSCPVCSKSMCDMTNLWKKLDEVIASTPMPEIYKDKMVWILCNDCGANSHVQFHIVAHKCKSCNSYNTRRIQGNPGTSCSSRMTEMVR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0402 297 Pfam CHY zinc finger 37 118 IPR008913 GO:0008270
Lal1g0402 297 SUPERFAMILY RING/U-box 171 220 - -
Lal1g0402 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 25 295 - -
Lal1g0402 297 ProSiteProfiles Zinc finger CHY-type profile. 30 106 IPR008913 GO:0008270
Lal1g0402 297 Pfam Ring finger domain 172 215 IPR001841 -
Lal1g0402 297 ProSiteProfiles Zinc finger RING-type profile. 173 216 IPR001841 -
Lal1g0402 297 ProSiteProfiles Zinc finger CTCHY-type profile. 108 172 IPR017921 -
Lal1g0402 297 SMART ring_2 173 215 IPR001841 -
Lal1g0402 297 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 295 - -
Lal1g0402 297 Pfam Zinc-ribbon 220 278 IPR039512 -
Lal1g0402 297 Gene3D - 245 284 - -
Lal1g0402 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 244 IPR013083 -
Lal1g0402 297 SUPERFAMILY CHY zinc finger-like 33 107 IPR037274 GO:0008270
Lal1g0402 297 SUPERFAMILY Zinc hairpin stack 109 166 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0402 Lal-Chr1 2472101 2477371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0402 35 282 C2H2 Transcription Factor Family AT3G18290 40.784 4.64e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0402 K10144 - gmx:100812709 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0402 1 2472101 2477371 Lal1g0402 1 2472101 2477371 ECH