Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0383 ATGGATCATAATACTCTCAAGTTCTGCACGTTGCTGATTCTTGTTGGATTATTAGTGAATCCCTCTTTTGCGAAAAATGATTTTGGACATTGCGAAAGAGTTGTTAAGGTTTGGGCAGATTCTTCACTTGATGAAGAAATCAGAGAAGATAAGCACACATTGAGGGATTTGCTGTTTTTCCTCCACATCCCTAGAACAGGAGGGCGCACATATTTTCACTGTTTTTTGAAGAAATTGTACCCTAGCTATCTGGAATGCCCTCGCTCATATGATAAGTTGCGCTTTGATCCAAGCAAACCAAAATGCAGGCTGTTAGTTACACATGATGACTATAGTATGACATCCAAACTTCCAAGGCAGAGAACTTCTGTGGTTACCATACTTAGGGATCCAATTGACCGTGTCTTTAGTACTTATGAATTTTCAATAGAGGTTGCATCTAGATTTTTGGTGCATCCAAACTTGACATCTGCAACACATATGGCTAAACGTTTGCGCTCTAAGACTAAAGGAGTAAGTACACTGGATATCTGGCCTTGGAAGTATTTGGTTCCATGGATGCAAGAAGACCTCTTTGCCAGGACCTTAATTGGACAGAGAGATGCTAGGTATAGTAGGGGACTGCATACCATGGAGAGCAGTGATTCTTATGACATGGATGACTTCGCAATGCCATTACAAGAATACATCAATCATCCGGCGGCTGGGGATCTTGTACATAATGGAGCCACATTCCAGGTTGCTGGTTTGACAAACAATTCTTATATAGAAGAAGCACATAAAGTGCGCCATTGTGTACAGAAGTATAAAATTCTTGGCAAGTATGTGCTACAAGTTGCAAAGAAGAGATTGGATGATATGTTATATGTTGGTCTTACTGAGGAGCACAGAGAATCTGCTACAATGTTTGCAAATGTGGTTGGTTCTCAGGTGATATCACAGCTTAATGCACCAAACGCTAGCCTGGATATTGTTGATAAGACAGAGCAAGAATCATCTTCGGATTCTGATCCTGATAGCAGTGAACATCAGAATAGCACCTCAGACAGGGAACCAAGTGAGGTTACATCAAGTGAGAGTGGAGAAGCAACAGAATTAAATATGACAGTTGGAGAGCTCATGAATGCTTATGAAGGCTGTATTTCTAAATTACGGAAGTCTCAATCACGCCGACGCATTGCATCTTTAAAGAAGATTTCTCCAGTCAACTTTTCAAGGGAGGCACGTCTTCATGTTTCTGAAGAGGTTCTTCATGAGATTCGGTCTCTTAATGACCTTGACATAGAGCTTTATGAGTATGCGAGAGCCATTTTCTATAAGCAACATAAAACTACCTTGGAGACATTTACTGAGGAGAGATGGGACAATATATCTAGCATCGACTATGGCATCACCATGTGGAAGCTTCTTCCATTAGCACTTATTTCTACTTTCATCCTTTTCTTATTCATAGTAATTGTAAATGCAAGAAGAAGAACGTCAAAGGTTAACATGAAAGATATTGCTGATATGAAGGATTGTTGGTTCTTGGAGAACAATTTTAATTGTCTTTCAGATGGAATTTTCGATGATGTTTTCGAGTTTTTCGATTTTCCTATAGAAGATGTGGAGACTGATTTTGTTGAAGAAGATTGGGCTGCTCAATTTAAACACATTGAAGAACCATCTCTTGGTGTTTTTTCAGTACCTCATTCAGAATTATGTGATGAGACTCCACAAATTGGGATTGGGAACACTTCCACTGATTCTCTTGAAAAGACTACAGGACCTACATATGGCAAAACTACTCCAAACCAGAATGTGCCTTTTAACAGGAAGGATGTGCACAAATTCCGAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGCTCTTCTTCAGCTGAGAATTCCAACTCTGACTTACCTGTCATCCCATTAAAGCGTTCCCGAGGCAAACGCCAGCGTCTCTCAAGCTTCAACTTGCTATTATCACTTCCTTTCATCTCTACCTCACCAGCTTTTGAAACACGGACATCAGGGAAATTAGTAACCAAAGTAAAAAAGAAGCAGAGGAAAAAGGATCTCTTACTACTCCCTGATCATAGTGAGATGAAGAGGCCCTCATCACAGGAGTCAGGTGTCCACAGGAAATGCACACATTGCGAGGTGACAGAGACGCCACAATGGAGAGAGGGACCAATGGGTCCGAAAACCCTGTGCAATGCTTGTGGAGTTCGTTACAGGTCTGGCCGGCTCTTTCCAGAATACCGGCCTGCAGCTAGCCCCACCTTCGTAGCATCGCTGCACTCAAACTCTCACAAGAAGGTCATAGAAATGAGACACAGAGCTGCTAAGGAAACTTTTAGAGGCTCTTCTGTGATGTCTTAA 2370 0.4139 MDHNTLKFCTLLILVGLLVNPSFAKNDFGHCERVVKVWADSSLDEEIREDKHTLRDLLFFLHIPRTGGRTYFHCFLKKLYPSYLECPRSYDKLRFDPSKPKCRLLVTHDDYSMTSKLPRQRTSVVTILRDPIDRVFSTYEFSIEVASRFLVHPNLTSATHMAKRLRSKTKGVSTLDIWPWKYLVPWMQEDLFARTLIGQRDARYSRGLHTMESSDSYDMDDFAMPLQEYINHPAAGDLVHNGATFQVAGLTNNSYIEEAHKVRHCVQKYKILGKYVLQVAKKRLDDMLYVGLTEEHRESATMFANVVGSQVISQLNAPNASLDIVDKTEQESSSDSDPDSSEHQNSTSDREPSEVTSSESGEATELNMTVGELMNAYEGCISKLRKSQSRRRIASLKKISPVNFSREARLHVSEEVLHEIRSLNDLDIELYEYARAIFYKQHKTTLETFTEERWDNISSIDYGITMWKLLPLALISTFILFLFIVIVNARRRTSKVNMKDIADMKDCWFLENNFNCLSDGIFDDVFEFFDFPIEDVETDFVEEDWAAQFKHIEEPSLGVFSVPHSELCDETPQIGIGNTSTDSLEKTTGPTYGKTTPNQNVPFNRKDVHKFRTYSPVSVFESSSSSSAENSNSDLPVIPLKRSRGKRQRLSSFNLLLSLPFISTSPAFETRTSGKLVTKVKKKQRKKDLLLLPDHSEMKRPSSQESGVHRKCTHCEVTETPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKKVIEMRHRAAKETFRGSSVMS 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0383 789 ProSitePatterns GATA-type zinc finger domain. 712 737 IPR000679 GO:0006355|GO:0043565
Lal1g0383 789 ProSiteProfiles GATA-type zinc finger domain profile. 706 742 IPR000679 GO:0006355|GO:0043565
Lal1g0383 789 Gene3D - 53 351 IPR027417 -
Lal1g0383 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 143 IPR027417 -
Lal1g0383 789 SMART GATA_3 706 756 IPR000679 GO:0006355|GO:0043565
Lal1g0383 789 MobiDBLite consensus disorder prediction 572 600 - -
Lal1g0383 789 Gene3D - 702 781 IPR013088 GO:0006355|GO:0008270
Lal1g0383 789 PANTHER TYROSYLPROTEIN SULFOTRANSFERASE-RELATED 4 445 - -
Lal1g0383 789 MobiDBLite consensus disorder prediction 327 365 - -
Lal1g0383 789 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 708 769 - -
Lal1g0383 789 CDD ZnF_GATA 711 758 IPR000679 GO:0006355|GO:0043565
Lal1g0383 789 PANTHER HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 4 445 IPR010635 GO:0008146|GO:0016021
Lal1g0383 789 Pfam GATA zinc finger 712 745 IPR000679 GO:0006355|GO:0043565
Lal1g0383 789 MobiDBLite consensus disorder prediction 571 600 - -
Lal1g0383 789 MobiDBLite consensus disorder prediction 328 349 - -
Lal1g0383 789 MobiDBLite consensus disorder prediction 350 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0383 Lal-Chr1 2323581 2339581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0383 511 787 C2C2-Gata Transcription Factor Family AT1G08010 39.384 7.83e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal1g0383 GATA 3.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0383 K22218 - gmx:100810026 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0383 1 2323581 2339581 Lal1g0383 1 2323581 2339581 ECH
Lal1g0383 1 2323581 2339581 Lal9g0277 9 1731056 1741597 LSH