Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal1g0380 | ATGCCGCCAAAGTTCGACCCCTCCCAAGTCGTCGACGTTTACGTCAGAGTCACCGGCGGTGAGGTCGGTGCGGCGAGTTCTCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCTAAGAAGATCGGAGAAGACATTGCCAAGGAAACCGCCAAGGATTGGAAGGGCCTCCGCGTTACCGTTAAGCTCACCGTTCAGAACCGTCAGGCGAAGGTCTCCGTTGTTCCCTCCGCCGCCGCGCTTGTCATCAAGGCCCTCAAGGAACCCGAACGTGACCGTAAGAAAACTAAGAACATCAAACACAATGGTAACATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGAGGCCAAGGTCGATGGCGAAGGAACTCGCTGGAACAGTGAAGGAAATTCTCGGAACATGTGTTTCTGTTGGATGCACTGTTGATGGAAAAGACCCTAAGGATTTGCAGACAGAGATTGATGATGGTGATGTTGAGGTACCTCAGGATTGA | 501 | 0.521 | MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQTEIDDGDVEVPQD | 166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal1g0380 | 166 | Pfam | Ribosomal protein L11, N-terminal domain | 13 | 69 | IPR020784 | - | |
| Lal1g0380 | 166 | Gene3D | - | 1 | 81 | IPR036796 | - | |
| Lal1g0380 | 166 | Hamap | 50S ribosomal protein L11 [rplK]. | 9 | 146 | IPR000911 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal1g0380 | 166 | SUPERFAMILY | Ribosomal L11/L12e N-terminal domain | 1 | 87 | IPR036796 | - | |
| Lal1g0380 | 166 | SMART | rl11c | 13 | 145 | IPR000911 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal1g0380 | 166 | PANTHER | 60S RIBOSOMAL PROTEIN L12 | 1 | 166 | IPR000911 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal1g0380 | 166 | MobiDBLite | consensus disorder prediction | 144 | 166 | - | - | |
| Lal1g0380 | 166 | Gene3D | - | 82 | 164 | IPR036769 | - | |
| Lal1g0380 | 166 | ProSitePatterns | Ribosomal protein L11 signature. | 131 | 146 | IPR020785 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal1g0380 | 166 | Pfam | Ribosomal protein L11, RNA binding domain | 75 | 144 | IPR020783 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal1g0380 | 166 | PANTHER | 60S RIBOSOMAL PROTEIN L12 | 1 | 166 | - | - | |
| Lal1g0380 | 166 | CDD | Ribosomal_L11 | 13 | 144 | IPR000911 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal1g0380 | 166 | SUPERFAMILY | Ribosomal protein L11, C-terminal domain | 76 | 149 | IPR036769 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal1g0380 | Lal-Chr1 | 2299988 | 2300488 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal1g0380 | 1 | 166 | Cytoplasmic Ribosomal Protein Gene Family | AT2G37190 | 88.554 | 3.54e-108 | 304 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal1g0380 | K02870 | - | dcr:108223850 | 319.316 |
Event-related genes